Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02358 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACAACAGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGGTTAGAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACAGCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGTCCTAA 957 0.5141 MAGFFSLGGTRRGGPQNKEEGEVEKGDNNIHNNNRNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLASLQSPQQFRPENIPKRYHRDTQLVSAPQPIAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRHLGLITAAATATATATTVGGNNPFEPSLYPASLNAFMSGTQFFHPPRS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02358 318 NCBIfam LRP1 C-terminal domain 204 252 IPR006511 -
Vian4g02358 318 MobiDBLite consensus disorder prediction 1 34 - -
Vian4g02358 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 303 IPR007818 GO:0003700|GO:0006355
Vian4g02358 318 MobiDBLite consensus disorder prediction 15 29 - -
Vian4g02358 318 Pfam Domain of unknown function (DUF702) 115 253 - -
Vian4g02358 318 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02358 Vian-Chr4 40301520 40303024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02358 1 318 C2H2 Transcription Factor Family AT1G75520 45.676 2.41e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian4g02358 DUF702 1.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02358 - - gmx:100818588 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02358 4 40301520 40303024 Vian10g00742 10 7245620 7247270 ECH
Vian4g02358 4 40301520 40303024 Vian4g02358 4 40301520 40303024 ECH