Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02353 ATGCTAAAATCAGGCATGAAAATTGAGGAGAAAAAACTGAAGAAAACAGCACAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCCGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTAGGGACATTTGAAACCTCTCAGGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTACGGCCCTGATGCCAAACTCAATTTACCAGACCATCCTGTGCCCCCAGTGTCTCACTTTCCACCACCACCACCTCCTGTTATCAACACTCCAACTCCTGATATGGAGAATCTGCAACAGCCTCTGATGCAAAACAACCTAGACATTCCAACTTGTTCTAATTTCAATTTCAATCCTGCAGTTTCCATGGCTTCTCACGAAGTTGGACTCACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTGGACACCAATCCTAAGCCAATTGCAACCTACACAAAGCCTGAGGGGATTGAGGGAGAGTTTTCTCCATCTTGGGAGACAATGACCGAGACTTTACCTGTTTTTGATGATTCTATCTGGGCCGAAGCTGCTATGTCTCTAGATCTTCCTCTAATTGCAGCAGAGAATGCGATTTACACACCGGAGAACAACAATTTGGCGGCCGATGTGGATATGTGGGACCCTCAAACTCCATGGTGCATGTAA 750 0.472 MLKSGMKIEEKKLKKTAQASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETSQDAALAYDAAARKLYGPDAKLNLPDHPVPPVSHFPPPPPPVINTPTPDMENLQQPLMQNNLDIPTCSNFNFNPAVSMASHEVGLTPIYTSDCIVSLPLDTNPKPIATYTKPEGIEGEFSPSWETMTETLPVFDDSIWAEAAMSLDLPLIAAENAIYTPENNNLAADVDMWDPQTPWCM 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02353 249 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Vian4g02353 249 MobiDBLite consensus disorder prediction 1 33 - -
Vian4g02353 249 MobiDBLite consensus disorder prediction 1 17 - -
Vian4g02353 249 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Vian4g02353 249 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Vian4g02353 249 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Vian4g02353 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02353 Vian-Chr4 40230106 40230855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02353 6 96 AP2-EREBP Transcription Factor Family AT1G75490 80.220 1.40e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian4g02353 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02353 - - gmx:100790057 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02353 4 40230106 40230855 Vian4g02353 4 40230106 40230855 ECH