Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02304 ATGGCGGAGCCTCAAAATCCTTCACCATTCACACATTCTTCAGCTTCTGAAATCGCAGCACAACCACAACCTCTGCCACCTCCCAAGCGGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCCACGAACCGTTTCGTCTGCGAGATCTGTAACAAAGGGTTCCAGCGCGATCAAAACCTGCAGCTTCACCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAGCGGGGGAGCAAGGAACCGCGGAAGAAGGCGTACGTGTGTCCCGAGCCTTCGTGCGTCCACCACAACCCCACCAGGGCGCTGGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCGGACTGGAAAGCCCATACAAAAACTTGTGGCAGCAGAGAGTACCGCTGCGACTGCGGCACCTTGTTTTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTATTAGCGCAAGAGAGCGCCAGGACCCAGGTCCAAGACCAGGCCCAGGCCCAGAATGTTAGCACTAGCAACGCTGATTTGGGTTCTTCGCCCCCTGCGCCTCCACTTACTCCCTCTGCGTCTGTGGTGTCTCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAAAGCAACCTGCTTCGGGACAAGCAGCACCCCTTCCAGTTCCAGTTCTTCCACTACTGTATTTGCAAGTGTATTGGCACCGTCCACAATAACAACTCATTCACATTCTCAATCACCGTCACCATCAACTTCCTTATTCTTCAACCTCATGTCAAATTTGGCTCGCTCCGATAGCCCTAACGCCATCACCAATATGAGGGAAACCACATCCCTCTCCCTCTCCTCACCACTCTATCTCTCCAACAACGACCCTTCCCACTTCGCAGCATCTCCTCAGCCTGCACTATCTGCCACTGCATTGCTCCAAAAAGCAGCTCAAATGGGTGCTTCCAGTGCTTCCCTTCTCCGTGGCTTAGGCTTAGCAACGACATCACCGTCATCCTTGGGGAAAGACGAGGTTTTTAACATTAGTGCAACCACAACAGCACAATGGAACGGCCAAGTAAAGCAAGAGAATCAGCCCGTGGTGGATAACCTCGGGCTTGGGCTTCCCTGTGGGAGTGATGTGATGATGGGCCCTTCTACCCCATTTGTGGGCCAGCCAATGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCTGCTTTGGTCACGTCTTTCGGAGGGAACTTTGATTCAGCCGGTGATGGAGGAGTTCACCGGTAG 1413 0.5357 MAEPQNPSPFTHSSASEIAAQPQPLPPPKRKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQDQAQAQNVSTSNADLGSSPPAPPLTPSASVVSPTLSIQSSEIPENPRKLSPMSPKATCFGTSSTPSSSSSSTTVFASVLAPSTITTHSHSQSPSPSTSLFFNLMSNLARSDSPNAITNMRETTSLSLSSPLYLSNNDPSHFAASPQPALSATALLQKAAQMGASSASLLRGLGLATTSPSSLGKDEVFNISATTTAQWNGQVKQENQPVVDNLGLGLPCGSDVMMGPSTPFVGQPMTRDLLGLSIGGGASRGGLSALVTSFGGNFDSAGDGGVHR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02304 470 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vian4g02304 470 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vian4g02304 470 MobiDBLite consensus disorder prediction 250 266 - -
Vian4g02304 470 MobiDBLite consensus disorder prediction 1 20 - -
Vian4g02304 470 SMART c2h2final6 134 154 IPR013087 -
Vian4g02304 470 SMART c2h2final6 99 129 IPR013087 -
Vian4g02304 470 SMART c2h2final6 58 80 IPR013087 -
Vian4g02304 470 MobiDBLite consensus disorder prediction 193 266 - -
Vian4g02304 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vian4g02304 470 MobiDBLite consensus disorder prediction 1 41 - -
Vian4g02304 470 FunFam protein indeterminate-domain 12-like 37 105 - -
Vian4g02304 470 MobiDBLite consensus disorder prediction 223 241 - -
Vian4g02304 470 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Vian4g02304 470 Gene3D Classic Zinc Finger 92 182 - -
Vian4g02304 470 MobiDBLite consensus disorder prediction 193 213 - -
Vian4g02304 470 Pfam Zinc-finger of C2H2 type 58 80 - -
Vian4g02304 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 439 IPR031140 -
Vian4g02304 470 Gene3D Classic Zinc Finger 54 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02304 Vian-Chr4 39886106 39888607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02304 29 438 IDZ Gene Family AT5G66730 50.547 3.38e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian4g02304 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02304 K25869 - gmx:100800089 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02304 4 39886106 39888607 Vian4g02304 4 39886106 39888607 ECH