Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02295 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCTTACTTCAACAATAATAATAGCAATGATGCTGGCAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGTCCGGTTTGCAAGGCCCTTGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCGAGATCCAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGACCTGAAACTGCTCCTCTACCGGAAACAAATAATTTTCCTCCTCCTGGGTTTGGATTTATGGGTGGCCTGGGAGGATTTGCGCCACCGCCAATGGCATCAACGAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGCTTTATACCGTCCTTTTTCAACTTTCAGTTGCATGGGTTTCACGATGGGGCCTTGTATGGGGGAGCGTCTGGTTTTCCTCATGGGTTTTCTAATACATTTCATGGTGTCCATGCTCATGGATATCCTCTTCGCACTCATCAAGGTCAACAAGATTATTATTTGAAGAAGCTGCTTCTAGTTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 696 0.4626 MASGFGESTGRSPPSPSYFNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPLPETNNFPPPGFGFMGGLGGFAPPPMASTRFGNFGLPAAFGGFIPSFFNFQLHGFHDGALYGGASGFPHGFSNTFHGVHAHGYPLRTHQGQQDYYLKKLLLVVVFCVLLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02295 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vian4g02295 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vian4g02295 231 MobiDBLite consensus disorder prediction 1 20 - -
Vian4g02295 231 SMART ring_2 32 72 IPR001841 -
Vian4g02295 231 CDD RING-HC_AtRMA-like 30 74 - -
Vian4g02295 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Vian4g02295 231 SUPERFAMILY RING/U-box 29 85 - -
Vian4g02295 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vian4g02295 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vian4g02295 231 MobiDBLite consensus disorder prediction 86 116 - -
Vian4g02295 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02295 Vian-Chr4 39786789 39787484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02295 30 214 C3H Transcription Factor Family AT1G19310 64.249 4.30e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02295 K10666 - gmx:100794086 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02295 4 39786789 39787484 Vian10g00655 10 6328140 6328835 ECH
Vian4g02295 4 39786789 39787484 Vian4g02295 4 39786789 39787484 ECH