Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02289 ATGATCACTACACAAAAATACCGGCTTTTCTGGTTCTACTTAGTAGCGGCTGAATTCATATTTTTCATTCCATTAACCAGTACCCAATTGCAGCATCACGAGTGCCGCCAAACATGCGGTTCCTCCGATCCTTTCCCTTACCCTTTCGGATTCTCCTCCGGATGCATAATCCGTTTGAATTGCACCGCCGGAAGAGCCTCCGTCGGAGAATTCCCCATCGAAAAGGTGAGCACATACAGCATAATCGTCAACATCGAAGCTCAGTGCAGTCGTCCGTTCGATAGTTTTGGCCAACTCTTCAGCCACAAATACGCGCCCACTTTGCGAAACGTGATTCTGTTGGAGAACTGTACCGGAACTCCCTTGCCCTTTCCCTGCTCCATTTCGGGGAATCTGGTTCGGACCCACTTCGAATCCGTGGGATGCAACGGCACAGTAGCGGACAATTTGACTTGCTACTTCGAGAACAAAACAAGCGGTTTCGTGAATCGCCGAGAATTGGAGTCTTCCGGGTGCAAGTACTTCATGTCATCTCTTTCATTCCCAGATGTTACAGACGTCTCCGGTGAGCCTCTGTCTTTGGAAGTAAATACAATCGAACTTGGATGGTGGGTCCAGGGAGATCGATGTCTGTGTTCCGATCACGCCAATTGTACCAACCTTCAATCCCCGGTGGACGGAAAGCCCGGTTTCCGCTGTGGCTGCCGCGACGGCTTCGTCGGCGACGGGTTTTTGGCCGGAACAGGTTGCCAGAAAGCCTCGTCATGCAACCCAGCGAAGTACTTATCTGGCCGATGTGGAGGAACAACCAGATTCATTGTCTTAATCGGAGGGTTTGTTATCGCCGTTTCACTGATTATCACTGCGGCTTCACTATGCTGTTTCTTCCGCCGGCGCACCAAACTGAAAGTCACAAAGAGCACAAAAAGACGATTAACCGAAGCCACCGGAAACAATGGTGTTCCTATCTATCCCTACAAAGACATTGAGAGAGCCACGAATAGTTTCTCAGAGAACCAACGGTTGGGAACTGGGGCGTACGGCACAGTTTATGCAGGGAAATTGTACAGCGATGAATGGGTTGCCATCAAAAGAATAAAACACAGAGACACTGACAGTATTGAACAGGTAATGAACGAGATCAAGCTCCTGTCCTCTGTGAGCCACACCAATTTAGTTCGCTTGTTGGGTTGCTCCATTGAATACGGAGAACAAATCCTGGTGTACGAGTTCATGCCCAATGGAACACTGAGTCAGCACTTGCAGAAGGAGAGAGGACAAGGTCTTCCTTGGTCCGTTCGACTCACCATTGCCACTGAAACGGCACAAGCCATCGCGCATCTTCATTCAGCCATTAATCCCCCCATTTACCACCGAGACATCAAATCCAGCAATATACTTTTAGACCACAATTTCAGGTCAAAAGTGGCAGACTTTGGTCTTTCTAGACTTGGAATGACTGAAATATCTCACATTTCAACTGCCCCACAGGGAACTCCTGGCTATGTGGATCCACAATATCATCAAGATTTTCACCTCTCTGACAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTAGTTGAGATCATAACGGGACTAAAAGTGGTAGACTTTTCACGTTCTCCTAATGAAGTGAACTTGGCTTCTCTTGCTGCAGATAGGATTGGAAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAACCCGAAACAAGAAGTGACGCTCGGACCCTTTCCTCCATACACAAGGTGGCTGAGTTGGCATTTAGATGCCTAGCGTTCCACAGGGACATGAGGCCTTCGATGACGGAAGTGGCTTGTGAGTTGGAGCAACTTAGGTTGTGTCAATGGACAACATTGGGAGACAACAATTGTGCAACCTCAACGGAGTTGTCCTCTTGCTCTTCCTCATCCAATGAAAGTGAGAAACCACTGAGTACCACAACGAAGAACGTTGGAGAAAAGGGTAAAGGGTACCTTAATATTCAAACTAGGCCTATTGGTTTGAAATCATTACAAAGGCCTAATATTAATTCACCAGTCTCGGTGCAAGACCAAGAGTTATGGTTGAGTGAACAGAGTTCTCCTTCATCAAATAGTTTTCCAAGCAAGTCATTTGATTGA 2127 0.4716 MITTQKYRLFWFYLVAAEFIFFIPLTSTQLQHHECRQTCGSSDPFPYPFGFSSGCIIRLNCTAGRASVGEFPIEKVSTYSIIVNIEAQCSRPFDSFGQLFSHKYAPTLRNVILLENCTGTPLPFPCSISGNLVRTHFESVGCNGTVADNLTCYFENKTSGFVNRRELESSGCKYFMSSLSFPDVTDVSGEPLSLEVNTIELGWWVQGDRCLCSDHANCTNLQSPVDGKPGFRCGCRDGFVGDGFLAGTGCQKASSCNPAKYLSGRCGGTTRFIVLIGGFVIAVSLIITAASLCCFFRRRTKLKVTKSTKRRLTEATGNNGVPIYPYKDIERATNSFSENQRLGTGAYGTVYAGKLYSDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQKERGQGLPWSVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDHNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRSPNEVNLASLAADRIGKGLLDEIIDPFLEPETRSDARTLSSIHKVAELAFRCLAFHRDMRPSMTEVACELEQLRLCQWTTLGDNNCATSTELSSCSSSSNESEKPLSTTTKNVGEKGKGYLNIQTRPIGLKSLQRPNINSPVSVQDQELWLSEQSSPSSNSFPSKSFD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02289 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vian4g02289 708 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02289 708 SMART serkin_6 336 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02289 708 Gene3D Laminin 211 245 - -
Vian4g02289 708 MobiDBLite consensus disorder prediction 630 658 - -
Vian4g02289 708 MobiDBLite consensus disorder prediction 684 708 - -
Vian4g02289 708 FunFam Wall-associated receptor kinase-like 14 303 411 - -
Vian4g02289 708 Pfam Protein kinase domain 337 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02289 708 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 649 IPR044652 GO:0004672
Vian4g02289 708 Gene3D Transferase(Phosphotransferase) domain 1 412 626 - -
Vian4g02289 708 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vian4g02289 708 SUPERFAMILY Protein kinase-like (PK-like) 315 610 IPR011009 -
Vian4g02289 708 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Vian4g02289 708 MobiDBLite consensus disorder prediction 630 655 - -
Vian4g02289 708 FunFam Wall-associated receptor kinase-like 14 isoform A 210 245 - -
Vian4g02289 708 FunFam Wall-associated receptor kinase-like 20 412 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02289 Vian-Chr4 39729121 39733763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02289 35 702 Receptor kinase-like Gene Family AT2G23450 51.399 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian4g02289 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02289 - - gmx:100777480 1134.01