Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02280 ATGGCCTCCAGCTTCTTTCTCTTACTCTCCCTATTCCTCTTCTCATCACTATCATCTTTCTCCCATGCACTTTCCGATGTTGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCATTTGGAGGAGAATCAGGACTTGCCCGACAACTACGTAAGTAACTACAAAACAAACCTAAAATTCGCTCACACCAGGCTAAAAGCTGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCCTCAAATTTCACATCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGTGCACAGGCTCTTGATGACAAAAATATCCAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTACCTTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCCCACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTTTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTTTTGGTCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTTGAAAAAGTTACGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACTTCAATGGGCTTAAGAACGTTGAGTACTTGTCCATTTCACATAACAAGTTTACAGGTTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAGCCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAAACAAGTGTGGCCATGGGGGCTCTCCATCTTCCGGTTCTCCATCAACGCCGTCTAAGTCACCCTCGCCACCTAAAAGTGAGAAACAGACACCATCACCACAGCCCAAATCTCCACCCACCCCTTCACAACAGCAACAGCCCAGCTCTCCCCCTCCGACACCTAAGCCACAACCACCACCTACCCCAACTCCACAACAACAACAACACACTCCCCCCACGCCTCAACAACCCACACCCTCACCACCACCACAGGATGATACCCACAGCGAATCACCCAAGAATCGTGAAAGAACTCCACCACCTGTCTACTCTCCTCCACCACCTGTCCACTCCCCACCACCCCCTGTTCAATCTCCACCCCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCTCCTCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCCCCTCCTCCCCCAGTGCATTCTCCACCACCACCCGTCCAATCTCCTCCCCCACCCGTTCACTCTCCTCCTCCACCCGTCCATTCTCCTCCTCCACCCGTCTTCTCTCCTCCTCCCCCAGTTTACTCTCCACCTCCACCTGTTCACTCTCCTCCTCCCCCAGTTCACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCACCAGTTTACTCTCCTCCGCCGCCTGTTCACTCTCCACCACCTCCAGTGTACTCTCCACCACCTCCAGTGTACTCTCCACCGCCACCAGTGCAGTCTCCACCACCTCCTACACCAACTCCTTCGCCTCCTATGGAAGACGTCGTCCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTACCATTGCCGGCTACTAG 2001 0.5012 MASSFFLLLSLFLFSSLSSFSHALSDVEASFIARRQMMHLEENQDLPDNYVSNYKTNLKFAHTRLKAAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCAQALDDKNIQVVAGIDLNHADIAGYLPPEVGLLTDLALLHINSNRFCGIIPHSFSNLRILYELDISNNRFVGRFPEHVLEISELRYIDIRFNDFEGELPPKLFKQSFDAIFLNNNRFSSNIPENIGSTPATVVVIANNNFSGCVPSSVGEMKSLNEFVLVNNNLTGCLPEEIGKLEKVTVFDISYNNFVGVLPRNFNGLKNVEYLSISHNKFTGFVPRNVCSLPHLVNFTFADNYFNGEEEGCVPQKKEPLLEDENNCIPDRPKQKQSNVCNEVISKPVDCSKNKCGHGGSPSSGSPSTPSKSPSPPKSEKQTPSPQPKSPPTPSQQQQPSSPPPTPKPQPPPTPTPQQQQHTPPTPQQPTPSPPPQDDTHSESPKNRERTPPPVYSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVFSPPPPVYSPPPPVHSPPPPVHSPPPPVQSPPPPVYSPPPPVHSPPPPVYSPPPPVYSPPPPVQSPPPPTPTPSPPMEDVVLPPHFGSSYASPPPPTIAGY 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02280 666 Gene3D Ribonuclease Inhibitor 234 356 IPR032675 -
Vian4g02280 666 MobiDBLite consensus disorder prediction 402 472 - -
Vian4g02280 666 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 6 544 - -
Vian4g02280 666 MobiDBLite consensus disorder prediction 384 666 - -
Vian4g02280 666 FunFam Leucine-rich repeat receptor protein kinase EMS1 232 322 - -
Vian4g02280 666 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Vian4g02280 666 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Vian4g02280 666 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Vian4g02280 666 Pfam Leucine rich repeat 280 333 IPR001611 GO:0005515
Vian4g02280 666 MobiDBLite consensus disorder prediction 484 645 - -
Vian4g02280 666 SUPERFAMILY L domain-like 74 345 - -
Vian4g02280 666 Gene3D Ribonuclease Inhibitor 69 233 IPR032675 -
Vian4g02280 666 PRINTS Proline rich extensin signature 433 454 - -
Vian4g02280 666 PRINTS Proline rich extensin signature 454 470 - -
Vian4g02280 666 PRINTS Proline rich extensin signature 415 427 - -
Vian4g02280 666 PRINTS Proline rich extensin signature 395 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02280 Vian-Chr4 39635170 39637170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02280 6 557 Trihelix Transcription Factor Family AT3G19020 47.213 1.08e-173 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02280 - - vum:124824494 635.95