Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02279 ATGGCGATTCGAGTTACCTTCTCCTTCTCTGGCTACGTAGCCCAGAATCTCGTCTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGTCCAACTGTTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTGCAAGAGTCCAATCATCTTGGGCCTGATTTCAATTATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCCTTCAAAACAAATTCCATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACCCCACCACGTGGGAGGTCGATAAAGGTGGCACGATACACACCGTTCCGAGTGATGTTCCCGGTTTTGGAAAGACTAGTTGGCTTTCGCGGCTTTTGAACGTGTCTTCTGAAGATGCAAAGGCTGCGTTCACTGCCATTACCGTCAGTTTGCTGTTTAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCTACTCTTGAAGTGGGTGACCGCGTTTTAACCGAGAAGGAGTATGGTTTTACTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTCTATTAGAACCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGATAATCGGAATAACAGCCTTGATTCTCACAACTGGGGCCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCACCTAAGGTGTCTGACTCTGACACCCTTCGTAAATTGCCTCCTAGGAACAAATCTGTGGCAATTTCTTGA 1011 0.5035 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRSNCWAQSTYSTLAGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDPTTWEVDKGGTIHTVPSDVPGFGKTSWLSRLLNVSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKEYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFLLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPPKVSDSDTLRKLPPRNKSVAIS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02279 336 MobiDBLite consensus disorder prediction 317 336 - -
Vian4g02279 336 Gene3D Umud Fragment, subunit A 203 311 - -
Vian4g02279 336 PRINTS Bacterial leader peptidase 1 (S26A) family signature 274 293 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian4g02279 336 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 210 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian4g02279 336 PANTHER SIGNAL PEPTIDASE I 124 220 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian4g02279 336 CDD S26_SPase_I 197 306 IPR019533 GO:0004252|GO:0006465
Vian4g02279 336 ProSitePatterns Signal peptidases I signature 3. 279 292 IPR019758 GO:0004252|GO:0016020
Vian4g02279 336 NCBIfam signal peptidase I 180 313 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vian4g02279 336 Pfam Signal peptidase, peptidase S26 229 312 IPR019533 GO:0004252|GO:0006465
Vian4g02279 336 Pfam Signal peptidase, peptidase S26 178 226 IPR019533 GO:0004252|GO:0006465
Vian4g02279 336 ProSitePatterns Signal peptidases I serine active site. 203 210 IPR019756 GO:0004252|GO:0016020
Vian4g02279 336 SUPERFAMILY LexA/Signal peptidase 195 317 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02279 Vian-Chr4 39626628 39628326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02279 231 313 MADS-box Gene Family AT1G29960 34.940 2.56e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02279 K03100 - gmx:100817525 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02279 4 39626628 39628326 Vian4g02279 4 39626628 39628326 ECH