Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02268 ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACGCCGCCCCCGCCGCCACCGCCGCAGCCTGTGCCCGTACCGCCGCAGTGGCTCCCGATGCAGTACCCAGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCTCCGCAGCCCTATGTCGCCTATCACCAGTACCAGCAGCAGCTCTCGCACGTGTCGCACGCGCACCATCAGGGATCCAGCGTCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGAGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCCAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCCAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATAGGCAAGCAAATGGTTCGTCTTTCGTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTCGGCAGTCCTTGGAATGGGGCATATTACGGGGGAGCTGTTTATGATGGTTATGGGTATGCTTTACCAGCTCCTCATGATCCCAGTATCTATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGTTAA 1266 0.485 MQPTSNGSDSQATEQNQQTPPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLSHVSHAHHQGSSVENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWNGAYYGGAVYDGYGYALPAPHDPSIYAAAYGAYPIYGGHQQQVS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02268 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 367 - -
Vian4g02268 421 SUPERFAMILY RNA-binding domain, RBD 281 391 IPR035979 GO:0003676
Vian4g02268 421 FunFam Polyadenylate-binding protein RBP47C isoform A 185 261 - -
Vian4g02268 421 SUPERFAMILY RNA-binding domain, RBD 61 173 IPR035979 GO:0003676
Vian4g02268 421 Gene3D - 173 275 IPR012677 -
Vian4g02268 421 CDD RRM3_NGR1_NAM8_like 290 361 - -
Vian4g02268 421 FunFam Polyadenylate-binding protein RBP47C isoform A 92 172 - -
Vian4g02268 421 MobiDBLite consensus disorder prediction 17 35 - -
Vian4g02268 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Vian4g02268 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 354 IPR000504 GO:0003723
Vian4g02268 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Vian4g02268 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Vian4g02268 421 MobiDBLite consensus disorder prediction 262 294 - -
Vian4g02268 421 Gene3D - 276 393 IPR012677 -
Vian4g02268 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Vian4g02268 421 Gene3D - 92 172 IPR012677 -
Vian4g02268 421 CDD RRM2_SECp43_like 185 264 - -
Vian4g02268 421 SMART rrm1_1 187 261 IPR000504 GO:0003723
Vian4g02268 421 SMART rrm1_1 94 169 IPR000504 GO:0003723
Vian4g02268 421 SMART rrm1_1 292 359 IPR000504 GO:0003723
Vian4g02268 421 CDD RRM1_SECp43_like 94 174 - -
Vian4g02268 421 MobiDBLite consensus disorder prediction 1 16 - -
Vian4g02268 421 SUPERFAMILY RNA-binding domain, RBD 169 280 IPR035979 GO:0003676
Vian4g02268 421 MobiDBLite consensus disorder prediction 266 294 - -
Vian4g02268 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Vian4g02268 421 MobiDBLite consensus disorder prediction 1 35 - -
Vian4g02268 421 FunFam Polyadenylate-binding protein RBP47 276 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02268 Vian-Chr4 39524346 39528189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02268 95 370 Eukaryotic Initiation Factors Gene Family AT4G34110 28.622 1.61e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02268 - - gmx:100777830 696.041