Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02260 ATGGTGGCAGCATCTGCATACGAGGAGACTCGTCGCAAGAGAGTAGAGGAAAACAGAAAGAGAATGGAAGCTCTCAATCTCCCTCTCCTCTCTCGAGCTCTTCACAAATGCCCTTCTCCCAAATCTTCTCCGTTAAAATCGATCAAGAAAAGCAGGACCACCGAAAAAGAGTTAGTTGTAGTGAGAAGATCTGGTCGTCTGGCGAAATTGTGTTCCCCTGTTTACAAAGAAATGCCTATTGATCGCATTTCTATACCTCGAAGATGTGTTAGCAATAGGCACAGAGATCTTAGTAATAGAGTATATGCCTCAGATGAAGCCAGGATGGAAGCATTAGAACAAGCAGAAAATTTAATGTCGGGTTTAAAATCTGATATCCCAAACTTCATAAAATCTATGCTCCAATCTCATGTCAGTGGAGGGTTTTGGCTGGGCCTTCCAGTTCATTTTTGCAAGAGCAATCTTCCAAAAGGAGACGAAGTGATGACTTTGATTGATGAAGATGGGAACGAGTATCCAACAATATATTTGAAACGCAAAACAGGACTTAGTGGGGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCTGATGGGGACGCTTTAATTTTCCAATTAATCAAGCGCACTACGTTCAAGGTGTACATTATTAGAGCGAATGGTCCTTCAAAGGATAAACAACTCGAGTGA 690 0.4232 MVAASAYEETRRKRVEENRKRMEALNLPLLSRALHKCPSPKSSPLKSIKKSRTTEKELVVVRRSGRLAKLCSPVYKEMPIDRISIPRRCVSNRHRDLSNRVYASDEARMEALEQAENLMSGLKSDIPNFIKSMLQSHVSGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLKRKTGLSGGWKGFAVAHDLADGDALIFQLIKRTTFKVYIIRANGPSKDKQLE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02260 229 Pfam B3 DNA binding domain 129 219 IPR003340 GO:0003677
Vian4g02260 229 SUPERFAMILY DNA-binding pseudobarrel domain 123 220 IPR015300 -
Vian4g02260 229 CDD B3_DNA 127 218 IPR003340 GO:0003677
Vian4g02260 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 221 IPR044837 -
Vian4g02260 229 ProSiteProfiles B3 DNA-binding domain profile. 129 220 IPR003340 GO:0003677
Vian4g02260 229 Gene3D - 103 221 IPR015300 -
Vian4g02260 229 SMART B3_2 129 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02260 Vian-Chr4 39473704 39476957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02260 6 220 B3 DNA Binding Superfamily AT3G19184 53.917 3.30e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian4g02260 B3 2.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02260 - - gmx:100797091 354.369