Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02253 ATGGTGGCAGTAGCAGTAGGAAGAGGCCTTCCTATTCAAACCCGCTCTTTATTCAATAGTAAGAACATAGATAGAGCTTCACCAGCAGGAAGAGTCTCGTGGCTTGGGCATTCTGCTGCTGTCACTCCACGTTATAGACAAACTTGTGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCTGAAAACTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCCCGCTTTGCAATGCTTGGGGTATTGGGAATTCTTGTGACAGATCTGCTTCGCGTCACAGGAGTTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACACAGACACTCTTCATTGCTAAAGAGGGGTCCTTCTTTGGACTGGAAGCTTCACTGGAAGGCTTAGAGCCAGGGTACCCAGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGATTCGAAGCTTAAAGAGATTAAAAATGGACGACTTGCAATGGTTGCAATGGTTGGCTTCTTTGTACAAGCTTCAGTGACTCACGTTGGACCAATTGACAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCATTGCGAATTCTAGTTCTTAG 726 0.4642 MVAVAVGRGLPIQTRSLFNSKNIDRASPAGRVSWLGHSAAVTPRYRQTCVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPENLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGVSKIPVWFEAGAVKYDLANTQTLFIAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDSKLKEIKNGRLAMVAMVGFFVQASVTHVGPIDNLVEHLSNPWHKTIIQTIANSSS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02253 241 Gene3D Chlorophyll a/b binding protein domain 56 241 - -
Vian4g02253 241 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 47 239 IPR001344 GO:0009765|GO:0016020
Vian4g02253 241 Pfam Chlorophyll A-B binding protein 64 209 IPR022796 -
Vian4g02253 241 SUPERFAMILY Chlorophyll a-b binding protein 50 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02253 Vian-Chr4 39415113 39416493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02253 47 233 Chloroplast and Mitochondria Gene Families AT3G61470 41.627 2.08e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02253 K08911 - gmx:100804934 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02253 4 39415113 39416493 Vian4g02253 4 39415113 39416493 ECH