Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02245 ATGGACACTGTGGAGCAGTTAAAGCTGGAGGAGGAGGAGGAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATTGTGACACCGACACCATGGATGGTTTTCATCCCCAAGAAGACTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTAGCAGATTTACTAGATAATAACCCTCCCAGCCACTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGACAACAGCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAACTGCAAACCCTTACGGTGAGAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCTGCTAACAATATTAGGCCCCTTGTCGGTGTTAATGCACCAGGGATAGGGTTTCCTGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACTTCCGGTTCCAATTTCACCCCTTATTTTCCTCTGCCTAATACCTATGATTAA 828 0.506 MDTVEQLKLEEEEEQQQQMDITTMMMQHLPQFSEPYCDTDTMDGFHPQEDFYSNNNNIRSGSTMPLADLLDNNPPSHLPWSSYSFTHLIPSPTSSAIISFSDNSNNPTPIMLQQTPTEGATATATANPYGEKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPLVGVNAPGIGFPVAMSGSIRTATTSGSNFTPYFPLPNTYD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02245 275 CDD bHLH_AtIND_like 170 226 - -
Vian4g02245 275 Gene3D - 168 235 IPR036638 GO:0046983
Vian4g02245 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 252 IPR045843 GO:0003700|GO:0006355
Vian4g02245 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 227 IPR036638 GO:0046983
Vian4g02245 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Vian4g02245 275 SMART finulus 175 224 IPR011598 GO:0046983
Vian4g02245 275 FunFam BHLH transcription factor 172 235 - -
Vian4g02245 275 Pfam Helix-loop-helix DNA-binding domain 179 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02245 Vian-Chr4 39353666 39354493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02245 134 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 86.869 7.09e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian4g02245 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02245 - - vum:124831293 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02245 4 39353666 39354493 Vian4g02245 4 39353666 39354493 ECH