Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02242 ATGTGCAACAGTTCGACGAAGACGATGGATGGTCCTGTAGTGCATAAGGTTTCAGAATGCTTCGTCAAAGCGAACCACTCCACCCGAGAATCAAACCAAATATGTCACTTAACACCTTGGGATATTGCCATGTTGTCTGCACACTATATCCAAAAGGGTCTTCTCTACAAGAAGCCTGCAACCCTTGTTGATGAACGTGATTTCATAGAAAATCTGTTGGAAAAGCTCAAACACTCTCTTTCTCTCACCCTCTCCCATTTCTATCCATTGTGTGGTCGCCTTGTCACCCACAAAACCAAAAACCCTCCCTTCTATACTGTTTTCGTCGATTGCACAAGTAATTCGGGAGCTAGATTCATCCATGCAACTTTAGATATAACAATATCTGATATCCTCTCTCCCGTTGATGTCCCACCCATTGTTCAATCATTGTTTGATCACGATAGAGCACTCAACCACGATGGTCACACCATGCCGCTGTTGTCCATCCAAGTAACCGAGCTAGTGGATGGTGTTTTCATAGGCTGTTCCATGAACCACTCTCTCGGTGATGGCACTGCTTATTGGAATTTCTTCAACGCGTGGTCAGAGATCTTTCGAGCTCAAGCTCAAGGCCATGAACATGATGTTCCCATATCGCACCCTCCCATTCACAACCGCTGGTTTCCGAATGGTTGCGTTCCACCAATCGATCTTCCTTTCAAACACCACAACGAGTTTATCAGCAGGTATGAAGCACCCATGATGAGAGAGAGAATATTCCACTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAAGCCAACTCGGAATGCAATACCACAAAAATATCTTCGTTCCAATCGCTGTCAGCACTTGTTTGGAGATGCATAACTCGGGCGCGGAGCTTGGCGCGTGATCAGAAAACAAGTTGCAAGTTATCGACAAACAACCGTACAAGAATGGATCCGCCACTGGCTAAGGAGTACTTTGGAAACTCGATTCATACACTGAATGCAGGAACAGCCACCTCAGGGGAATTGCTTGAGAATGGTCTGGGATGGGCAGCGTGGAAGTTGCACATGGCTGTTATAAACCATAATGACAGGGTGGTGTTGGGATGGGTGAGGGAGTGGTTAAAGTGTCCTCTGATATATCAACTTGGTCGTTATTTTGACCCCTACTGTGTGATGATGGGAAGCTCACCCAGATTCAACATGTACGGGAATGAATTTGGAATGGGGAAAACAGTAGCAGTTAGAAGTGGATATGCCAACAAATTTGATGGAAAAGTTACGTCATATCCAGGTCATGAAGGAGGAGGAAGCGTGGATTTAGAAGTATGTCTTTCTCCAAGTGTTATGACTGCGCTGGAATCCGACCAGGAGTTCATGGATTCAGTTTCAGCTTCCAATCCTCTCTAG 1404 0.453 MCNSSTKTMDGPVVHKVSECFVKANHSTRESNQICHLTPWDIAMLSAHYIQKGLLYKKPATLVDERDFIENLLEKLKHSLSLTLSHFYPLCGRLVTHKTKNPPFYTVFVDCTSNSGARFIHATLDITISDILSPVDVPPIVQSLFDHDRALNHDGHTMPLLSIQVTELVDGVFIGCSMNHSLGDGTAYWNFFNAWSEIFRAQAQGHEHDVPISHPPIHNRWFPNGCVPPIDLPFKHHNEFISRYEAPMMRERIFHFSAESIAKLKAKANSECNTTKISSFQSLSALVWRCITRARSLARDQKTSCKLSTNNRTRMDPPLAKEYFGNSIHTLNAGTATSGELLENGLGWAAWKLHMAVINHNDRVVLGWVREWLKCPLIYQLGRYFDPYCVMMGSSPRFNMYGNEFGMGKTVAVRSGYANKFDGKVTSYPGHEGGGSVDLEVCLSPSVMTALESDQEFMDSVSASNPL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02242 467 Gene3D - 16 226 IPR023213 -
Vian4g02242 467 Gene3D - 237 454 IPR023213 -
Vian4g02242 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 17 458 - -
Vian4g02242 467 FunFam Tryptamine hydroxycinnamoyl transferase 235 455 - -
Vian4g02242 467 Pfam Transferase family 21 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02242 Vian-Chr4 39259139 39260542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02242 74 452 Monolignol Biosynthesis Gene Families AT5G48930 27.250 1.94e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02242 - - gmx:100787228 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02242 4 39259139 39260542 Vian4g02242 4 39259139 39260542 ECH