Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02240 ATGATGAATTCCCCCGTCGTTCGAATCGTTTCAGAATGTTTTGTCAAGCCATCGGGCCAAGCTCAAGAATCAGATCGAATCAGCAATTTAACACCTTGGGATATTGCTATGCTGTCTTTGCATCACATCCAGAAGGGTCTACTCTTCCAGAAGCCAAAAACACTTGTTGATCAGCATCATTTCATACAGAATCTGTTGGAGAAACTCAAACACTCTCTTTCTCTAGCCCTCTTCCATTTCTATCCGTTGTCCGGTCGCCTTGTCACCCACAAAACCGAGGACCCTTCATCTTATACTATTTTTGTTGATTGCAGCAACAGCAGAGGAGCTAGATTCATCCATGCAACTTTGGATATGACAATATCTGACATCCTCTCCCCCGTTGATGTCCCTCCTATTGTGCACTCATTCTTTGACCTCCACAAAGCAGTCAACCATGATGGTCATACCATGCCACTCTTGTCGATTAAAGTTACTGAACTAGTGGACGGTGTTTTCATAGGTTGTTCCATGAACCACAATATCGCTGATGGCACTTCTTATTGGAATTTCTTCAATGCATGGTCTGAGATCTTTCAAGCTCAAGCTGAAGGGAATGAACACGATGTTCCGATTTCATGTCATCCTATTCATAACCGGTGGTTTCCAGATGGTTGCGGCCCATTAATCAACCTTCCCTTCAAACATCACGACGAGTTTATTAGCAGATTTGAAGCACCCCAGCTGAGGGAGAGAATCTTCCATTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAGGGCGAATTCAGAGTCCAAAACCACACAAATCTCTTCGCTCCAATCCTTATCAGCTCATGTTTGGAGATGCGTAACACGGGCACGCCAGATGGCACACGGTGAGAGAACAAGTTGCAAATTGGCCATAAATAACCGGTCAAGAATGGAACCGCCTCTGCCGGCCGAGTACTTTGGAAGTGCTGTTGGTGTGGTGAGCGCAGAGAGCACGGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCTGCACGGAAGGTGCTCGTGGCTGTTGACAACCATAACGACAGAGTGGTGAGAGACATGGTGAAAGAGTGGTGGCAGCATCCAGTGATTTACCAACTTGGTGTGATCGTTGACTCCAGTTGCGTGATGATATCAAGTTCTCCCAGGTTCAATGTGTATGGAAATGAATTCGGAATGGGAAAAGCGGTGGCAGTTCTGAGTGGGTATGCCAACAAATTTGACGGAAACGTGATCGCACATCCAGGACGTGAAGGAGGAGGAAGCATAGATTTTGAACTCTCCCTTTCACCTCATGTAATGTGTGCACTGGAATCAAATCACGAGTTCATGGAAGCTGTTTCCGTGCCCAATATTCTGCACTACCCAGTTCGTTGA 1395 0.4602 MMNSPVVRIVSECFVKPSGQAQESDRISNLTPWDIAMLSLHHIQKGLLFQKPKTLVDQHHFIQNLLEKLKHSLSLALFHFYPLSGRLVTHKTEDPSSYTIFVDCSNSRGARFIHATLDMTISDILSPVDVPPIVHSFFDLHKAVNHDGHTMPLLSIKVTELVDGVFIGCSMNHNIADGTSYWNFFNAWSEIFQAQAEGNEHDVPISCHPIHNRWFPDGCGPLINLPFKHHDEFISRFEAPQLRERIFHFSAESIAKLKARANSESKTTQISSLQSLSAHVWRCVTRARQMAHGERTSCKLAINNRSRMEPPLPAEYFGSAVGVVSAESTVGELLENDLGWAARKVLVAVDNHNDRVVRDMVKEWWQHPVIYQLGVIVDSSCVMISSSPRFNVYGNEFGMGKAVAVLSGYANKFDGNVIAHPGREGGGSIDFELSLSPHVMCALESNHEFMEAVSVPNILHYPVR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02240 464 Gene3D - 6 221 IPR023213 -
Vian4g02240 464 FunFam Tryptamine hydroxycinnamoyl transferase 229 447 - -
Vian4g02240 464 Pfam Transferase family 7 450 - -
Vian4g02240 464 Gene3D - 231 446 IPR023213 -
Vian4g02240 464 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02240 Vian-Chr4 39242596 39243990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02240 67 444 Monolignol Biosynthesis Gene Families AT5G48930 27.387 6.89e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02240 - - vum:124831304 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02240 4 39242596 39243990 Vian4g02240 4 39242596 39243990 ECH