Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02239 ATGGCTAGCCATGCCTTTCGTCGCATTTCCGAATGCTTCGTCCAGCCACACCGCCCCACTCAAATGTCAAACCAAATTTGCCATTTAACACCTTGGGATATTGCAATGTTGAGTAGCCACTATATCCAGAAGGGTCTACTTTTCAAGAAGCCTTCAACACTTGTTCATCCAGATCATTTCACAGACAAACTGTTGGAGAAACTCAGACACTCTCTTTCTCTCACCCTCTCCCATTTCTATCCATTAGCGGGCCGTTTCGTCACCCACAAAACGCAAGACCCTCCCTCTTATGCTGTTTTCATTGATTGCAAAAACAGTGACGGAGCTAAATTCATCTATGCAACCTTGGACATGACCATATCTGACATACTCTCTCCCATTGACGTCCCACCCATTGTCCACTCATTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCATTGTTGTCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATGCTGCTGGTGATGGCACTTCTTACTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCTCATGATCAAGGACATGAATACGAGGTTTCCATTTCACAGCAACTCATTCACAATAGATGGTTTCCGAATGATTGCAGCCCACCAATCAATCTTCCTTTCAAACATCACGACGAGTTTATCAGCAGATTTGAAGCGCCCTTTCTGAGAGAGAGAGTCTTCCACTTTTCGGCGGACTCTATTGCGAAACTGAAAGCAAAAGCCAACTCAGAGTGCAATACCACAAAAATCTCTTCATTCCAGTCATTATCAGCACTTGTTTGGAGAAGCATAACTCGAGCCCGCTCCCCACCGTACGAGCAAAGAACAAGTTGCAAGTTGGCCATAAACAATCGACCAAGAATGGGAGCGGTGCCTGAGGAATACTTTGGAAACTCAATTCATGTGGTGAGTGCAGAAACAACGACAGGGGAATTGGTTGAGAATGGTCTAGGATGGGCAGCGTGGAAGTTGAACTTGACTGTTGCAAAGCATAATGAGAGAGTGGTACTGGAATTGCTGAGAAAGTGGTTAGAATGTCCATTGATATATGACCTTGGTAGTTTCTTTGACCCGTACTGTGTGATGATGGGTAGCTCGCCCAGGTTTAGCGTGTATGGAAATGAATTTGGAATGGGAAAAGCAGTGGCCGCTAGAAGTGGGTATGCTAACAAGTATGATGGGAAAGTGACATCATATCCAGGTCGTGAAGGAGGGGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCAGATAATATGAGAGCGCTCGAATCGGATCAAGAGTTCATCAATGCAACTTCTCACTCCAGTCTCTTGTACTAG 1377 0.451 MASHAFRRISECFVQPHRPTQMSNQICHLTPWDIAMLSSHYIQKGLLFKKPSTLVHPDHFTDKLLEKLRHSLSLTLSHFYPLAGRFVTHKTQDPPSYAVFIDCKNSDGAKFIYATLDMTISDILSPIDVPPIVHSFFDHHKAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHAAGDGTSYWNFFNTWSQIFQAHDQGHEYEVSISQQLIHNRWFPNDCSPPINLPFKHHDEFISRFEAPFLRERVFHFSADSIAKLKAKANSECNTTKISSFQSLSALVWRSITRARSPPYEQRTSCKLAINNRPRMGAVPEEYFGNSIHVVSAETTTGELVENGLGWAAWKLNLTVAKHNERVVLELLRKWLECPLIYDLGSFFDPYCVMMGSSPRFSVYGNEFGMGKAVAARSGYANKYDGKVTSYPGREGGGSIDLEVCLSPDNMRALESDQEFINATSHSSLLY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02239 458 Pfam Transferase family 12 447 - -
Vian4g02239 458 Gene3D - 234 444 IPR023213 -
Vian4g02239 458 Gene3D - 9 220 IPR023213 -
Vian4g02239 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02239 Vian-Chr4 39239067 39240443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02239 66 442 Monolignol Biosynthesis Gene Families AT5G48930 26.980 2.67e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02239 - - vum:124831304 943.34