Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02237 ATGAGTACCCCCGCCATTCGACGCATTTCAGAATGCTTTGTGAAGCCTCGATCCTCCAACCAAATCTGCAATTTAACTCCTTGGGATATTGCTATGTTGTATACAAACTATATCAAGCAGTGTCTTCTCTTCAAGAAACCTGCGACCCTTATTGATGAACATCATTTCAAACAAAATCTGTTGGAGAAGCTCAAAAACTCTCTTTCTCTTACCCTCTCCCATTTTTATCCTTTGTCCGGTCGCCTAGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGAATATGACTATAGCTGATATCCTCTCCCCCTTTGACGTCCCACCCATTTTTCAATCGTTCTTTGACCACCCCAAAGCACTCAACCATGACCATCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTATCATAGGTTGTTCCATGAATCACGCTGTTGCTGATGGCACTTCGTATTGGAATTTCCTCAATACGTGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTCCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCAAATAATTGTAGACCACCGATCTCTCTTCCTTACAAATATCATGACGAGTTTATAGAGAGATCTGAAAGACCCCTCCTGAGGTGTAGATATTTTCACTTTTCAGCAGAGTCTATTTCGAAACTGAAAGCAAAGGCCAACTCAGAATCCAATACCACAGTAATCTCTTCCCTCCAGTCATTATCAGCACTCGTTTGGAGATCCATAACTCGTGCGCGCTCCCCGCCTTCTGACCAGAAAACAACTTTCAGATTAGCCGCAGACTGTCGATCAAGAATTAAGCCGCCTTTGGCAGAAGAATACTTTGGAAACTGCCTTCATGTAACGAGTGCAGAAGCGACAACAAAGGAATTACTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGCTGTTACAGACCTTAACGATAGAGTGGTGCTAGAATTTCTGGAAGGGTGGTTAGATTCTCCTTTCATAATTCAAATGGGTCGTTACTTTGACCCGTACAGCTCGTTGATGGTTAGTTCGCCCAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGTTCTGCAAACAAACTTGATGGGAAGGTGTCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCACAGACAATGAGTGCTTTGGAATCAGACCAAGAGTTCATGAATGCAGTTACTGAGTTTGATTCCCTGTTGTTCTAG 1377 0.4401 MSTPAIRRISECFVKPRSSNQICNLTPWDIAMLYTNYIKQCLLFKKPATLIDEHHFKQNLLEKLKNSLSLTLSHFYPLSGRLVTHKTQNPPSYTVSIDCNNSDGARFIHATLNMTIADILSPFDVPPIFQSFFDHPKALNHDHHTMPLLSIQVTELVDGVIIGCSMNHAVADGTSYWNFLNTWSQIFQAQSQSENHEYDVPISRQPIHNRWFPNNCRPPISLPYKYHDEFIERSERPLLRCRYFHFSAESISKLKAKANSESNTTVISSLQSLSALVWRSITRARSPPSDQKTTFRLAADCRSRIKPPLAEEYFGNCLHVTSAEATTKELLENGIGWAAWKLHVAVTDLNDRVVLEFLEGWLDSPFIIQMGRYFDPYSSLMVSSPRFNMYGCEFGMGKAVAARSGSANKLDGKVSSYPGREGGGSIDLEVCLSPQTMSALESDQEFMNAVTEFDSLLF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02237 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
Vian4g02237 458 Gene3D - 8 221 IPR023213 -
Vian4g02237 458 Gene3D - 227 443 IPR023213 -
Vian4g02237 458 Pfam Transferase family 17 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02237 Vian-Chr4 39228037 39229413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02237 12 441 Monolignol Biosynthesis Gene Families AT5G48930 26.327 1.61e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02237 - - vra:106761257 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02237 4 39228037 39229413 Vian4g02237 4 39228037 39229413 ECH