Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02236 ATGAGTACCCCCACCGTTCGACGCATTTCAGAATGCTTTGTTAAGCCTCAATCCTCCAACAAAATCTGCAATTTAACTCCTTGGGATATTCTGTCGATTAAAAAATACATCCACCACTGTCTTCTCTTCAAGAAACCTGCAACCCTTATTGATGAACATCATTTCATACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTACCCTCTTCCATTTTTATCCTTTGTCTGGTCGCCTTGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATGACTATAGCTGATATCCTCTCCCCCTTTGACGTCCCACCCATTGTTCAATCATTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCGTGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTATCATTGGTTGTTCTATGAATCACTCTGTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACCTGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTTCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCACATAATTGTAGTCCACCAATCTCTCTTCCTTTCAAACATCATGACGAATTTATAGAGATATCTGAAAGACCCCTCCTGAGGTTGAGATTTTTCCACTTTTCAGCTGAGTCTATTGCCAAACTGAAAGCGAAGGCCAACTCAGAATCTAATACCACAAAAATCTCTTCCTTCCAGTCATTATCAGCACTCGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCTTCTGACCAGAAAACAACTTTCAGATTTTCCGCAGACTGTAGATCAAGAATGAAGCCGCCTTTGGCAGAAGAATACTTTGGAAACTGCGTTCATGCAGCGAGTGCAGAAGCGACAACAAGGGAATTACTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGGTGTTACAGACCTTAACGATAGAGTGGTGGTAGAATTTCTGGAATGGTGGTTAGATTCTCCTTTCATAGGTCAAACGGGTGGTTACTTTGACCCGTACAGCTTGTTGATGGGTGGTTCGCCGAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCGGTTAGAAGTGGTATTGCAAACAAATTTGATGGGAAGGTATCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTAATTTGGAAGTTTGCCTTTCGCCACAGACAATGAGTGCTTTGGAATCAGACGAAGAGTTCATGAATGCAGTTACTGAGTTTGATCCCCTGTTGTTCTAG 1374 0.4367 MSTPTVRRISECFVKPQSSNKICNLTPWDILSIKKYIHHCLLFKKPATLIDEHHFIQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTVSIDCNNSDGARFIHATLDMTIADILSPFDVPPIVQSFFDHHKAVNHDGHTVPLLSIQVTELVDGVIIGCSMNHSVGDGTSYWNFFNTWSQIFQAQSQSENHEYDVPISRQPIHNRWFPHNCSPPISLPFKHHDEFIEISERPLLRLRFFHFSAESIAKLKAKANSESNTTKISSFQSLSALVWRSITRARSPPSDQKTTFRFSADCRSRMKPPLAEEYFGNCVHAASAEATTRELLENGIGWAAWKLHVGVTDLNDRVVVEFLEWWLDSPFIGQTGGYFDPYSLLMGGSPRFNMYGCEFGMGKAVAVRSGIANKFDGKVSSYPGREGGGSINLEVCLSPQTMSALESDEEFMNAVTEFDPLLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02236 457 Gene3D - 1 224 IPR023213 -
Vian4g02236 457 Gene3D - 230 441 IPR023213 -
Vian4g02236 457 Pfam Transferase family 14 446 - -
Vian4g02236 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02236 Vian-Chr4 39223214 39224587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02236 12 440 Monolignol Biosynthesis Gene Families AT5G48930 25.877 1.82e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02236 - - vra:106761257 837.025