Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02235 ATGCTGTCTACAAACTATATCCAGAAGGGTCTTCTCTTCAAGAAACCTGCGACCCTTATTGATGAACATCATTTCATACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTACCCTCTTCCATTTTTATCCTTTGTCTGGTCGCCTTGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATGACTATAGCTGATATCCTCTCCCCCTTTGACGTCCCACCCATTGTTCAATCATTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCGTGCCGCTGTTGTCCATCCAAGTCACTGAATTAGTGGACGGTGTTTTCATTGGTTGTTCTATGAATCACTCTGTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTTCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCACATAATTGTAGTCCACCAATCTCTCTTCCTTTCAAACATCATGACGAGTTTATTTGGAGATCTGAAACACCCTTGCTGAGAGAGAGATTTTTCCACTTTTCAGCAGAATCAATTGCCAAACTGAAAGCAAAGGCCAACTCAGAATCTAATACCACAAAAATCTCTGCCTTCCAATCATTATCAGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCGTCTGACCAGAAAACAACATGCAGATTAGCCGCAAACAATCGATCGAGAATGAAGCCGCCTGTGGCAGAAGAATACTTTGGAAACTGTGTTCATGCAGTGAGTGCAGAAACGACAACAGGGGAATTGCTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGCTGTTACAGACCTTAACGATAGAGTGGTGCTAGAATTTCTGGAAGGGTGGTTAGATTCTCCTTTCATAATTCAAATGGGTCGTTACTTTGACCCGTACAGCTTGTTGATTGGTAGTTCGCCCAGGTTCAATATGTATGGGTGTGAATTTGGAATGGGGAAAGCGGTGGCTTCTAGAAGTGGTTATGCAAACAAATTTGATGGGAAGGTATCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCACAGACAATGAGTGCTTTGGAATCAGACCAAGAGTTCATGAATGCAGTTACTGAGTTTGATCCCCTGTTGTTCTAG 1284 0.4361 MLSTNYIQKGLLFKKPATLIDEHHFIQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTVSIDCNNSDGARFIHATLDMTIADILSPFDVPPIVQSFFDHHKAVNHDGHTVPLLSIQVTELVDGVFIGCSMNHSVGDGTSYWNFFNTWSQIFQAQSQSENHEYDVPISRQPIHNRWFPHNCSPPISLPFKHHDEFIWRSETPLLRERFFHFSAESIAKLKAKANSESNTTKISAFQSLSALVWRSITRARSPPSDQKTTCRLAANNRSRMKPPVAEEYFGNCVHAVSAETTTGELLENGIGWAAWKLHVAVTDLNDRVVLEFLEGWLDSPFIIQMGRYFDPYSLLIGSSPRFNMYGCEFGMGKAVASRSGYANKFDGKVSSYPGREGGGSIDLEVCLSPQTMSALESDQEFMNAVTEFDPLLF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02235 427 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 417 - -
Vian4g02235 427 FunFam Tryptamine hydroxycinnamoyl transferase 195 413 - -
Vian4g02235 427 Pfam Transferase family 1 416 - -
Vian4g02235 427 Gene3D - 1 187 IPR023213 -
Vian4g02235 427 Gene3D - 198 412 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02235 Vian-Chr4 39211959 39213242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02235 31 410 Monolignol Biosynthesis Gene Families AT5G48930 26.847 8.90e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02235 - - vra:106761257 851.662