Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02234 ATGGCGCAAGTTCCTGACAATGATAGCAGTGAAGAGACGAATTCCAGGTTCCACACGACGTTGTACGTAGGGGATCTTGACGAGACCATCGACGAGAGCCAGCTCTTTATTATCTTCGATCATGTTGCAAAAGTCGTTTCCGTTCGAATTTGCCGCGACTACGCAACTGGGAAGTCCCTTGGTTACGCCTACGTGACTTACAGTAGCCGTTACAATGCCGCTAAAGCAATAAAAGAGCTAAATTTCGTTTCGGTGAATGGCAAAACCATTAGGGTAACGTATTCTAATCGGGACCCCAGTGTTCGTAAGAGTGGTAGAGCTAACCTTTATGTAAAGAATTTGGCTCCGTCAATCTATCACAAGGCTCTATACGATCTCTGTTCGTCTTTTGGGAATATTCTATCTTGCACGGTTGCAACGGATGCTTCTGGCCAGTCTAAAGGTTATGGTTTTGTGCAGTTTGAGAGCGAAGCATCTGCAAAAGAAGCGATTGAAAAGTTAAACGGCACGCTGCTCAAAGATAAAAAGATCTATATGGGTCCTTTCGTGTCAAAGCAGGACAGAGTGAATAGTGACGCAAGCTTTTCAAATGTTTATGTTAAAAACCTGTCAGACACAATAACGGATGCTGAGTTGCAGAATATTTTCGGAGAATATGGTGATATTACAAGTGCTGTAGTGATGAGACATACAGATGGTAGATCAAAAGGTTTTGGTTTTGTGAATTTTGCAAATGCAGACAATGCTGCTAGAGCTCGGGACGGTCTTGATGGACAGACCTATCATGGTAAGACTTGGTGTGTTAGAAGAGCCCAGAAAAAAACTGAAAGGGAGCGTGAACTGACAGAGCAATATGACCAGAATAGGGGGATTTTCTCTCCTAGGCAAGGTAGAAACTTGTATATAAAGAACTTGGACAATAGGATTGATGATGACACTCTTAAGAAAATTTTCTGTGAGTTTGGTATAATAATCTCAGCCAAGGTTATGAGAGATGCAAATGGAAGAAGTAAAGGAGTTGGATTTGTTGCATACTCAAGTCGGGAGGCAGCAAATCAGGCTATTGTGTTGATGCATGGTCGAGTAGTTGCAGGAAAACGTCTATATGTTGCCTTTGCACAGAAAAGGGCAGAGAGAAGAGCAATGTTAGAGGAAGAACTTGATTACCACCTGCAGAATCTTCCTCGCTTAGAGATGGCAACTGGTCCTCCATTTTCATTCTTAATGCCTCAGCGTGGACCCCCGCGGCCAAGAGGACACCGACCACCAGGTCTTGGGCAACCGCTCGTGTCACACCAGCAGGTCTTATTCCGTATTCCTTTGGTCATTGCATTGTATTTTCCATTCTCTACTTCTGATGTGGATACTTGTTACTGTGGATTTCAGACGATTCCACGGGGAAATTTTTTTCAAGGTCCTCGTCGTCCCAACGTGCAAAATAGTGAAATGGTCCCCTTTAACCTTGGTCAGCCAGTGCCACCTCAGACCTTGGCATCAGCCGTTGCCAATGCTCCTCCTGTAGAACAGAGGAATGTGCTTGGTGAAATTTTATTCCCGTTAGTACAAAGGCTGGTGCATAATGCAGCACCAAAGGTTACTGGTATGCTTTTAGAGCTGGACCAGGCTGAGGTGTTACATATGATTCAGTCAGCAAATGCTCTGGAGGAAAAGGTTGCGGAGGCCATCGCTGTACTGAGACGACATGCAGAAGAGCGATCAAACAGGCGCTGA 1731 0.4466 MAQVPDNDSSEETNSRFHTTLYVGDLDETIDESQLFIIFDHVAKVVSVRICRDYATGKSLGYAYVTYSSRYNAAKAIKELNFVSVNGKTIRVTYSNRDPSVRKSGRANLYVKNLAPSIYHKALYDLCSSFGNILSCTVATDASGQSKGYGFVQFESEASAKEAIEKLNGTLLKDKKIYMGPFVSKQDRVNSDASFSNVYVKNLSDTITDAELQNIFGEYGDITSAVVMRHTDGRSKGFGFVNFANADNAARARDGLDGQTYHGKTWCVRRAQKKTERERELTEQYDQNRGIFSPRQGRNLYIKNLDNRIDDDTLKKIFCEFGIIISAKVMRDANGRSKGVGFVAYSSREAANQAIVLMHGRVVAGKRLYVAFAQKRAERRAMLEEELDYHLQNLPRLEMATGPPFSFLMPQRGPPRPRGHRPPGLGQPLVSHQQVLFRIPLVIALYFPFSTSDVDTCYCGFQTIPRGNFFQGPRRPNVQNSEMVPFNLGQPVPPQTLASAVANAPPVEQRNVLGEILFPLVQRLVHNAAPKVTGMLLELDQAEVLHMIQSANALEEKVAEAIAVLRRHAEERSNRR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02234 576 PANTHER RNA BINDING PROTEIN 291 411 - -
Vian4g02234 576 SMART poly_2 505 568 IPR002004 GO:0003723
Vian4g02234 576 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 397 IPR006515 GO:0003723
Vian4g02234 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Vian4g02234 576 SUPERFAMILY RNA-binding domain, RBD 19 185 IPR035979 GO:0003676
Vian4g02234 576 SMART rrm1_1 299 371 IPR000504 GO:0003723
Vian4g02234 576 SMART rrm1_1 197 269 IPR000504 GO:0003723
Vian4g02234 576 SMART rrm1_1 108 180 IPR000504 GO:0003723
Vian4g02234 576 SMART rrm1_1 20 93 IPR000504 GO:0003723
Vian4g02234 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Vian4g02234 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 177 IPR000504 GO:0003723
Vian4g02234 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 91 IPR000504 GO:0003723
Vian4g02234 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 368 IPR000504 GO:0003723
Vian4g02234 576 CDD RRM2_I_PABPs 105 181 IPR045305 -
Vian4g02234 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Vian4g02234 576 Pfam Poly-adenylate binding protein, unique domain 501 565 IPR002004 GO:0003723
Vian4g02234 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Vian4g02234 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 375 IPR000504 GO:0003723
Vian4g02234 576 FunFam Poly(A) binding protein cytoplasmic 1 like 291 379 - -
Vian4g02234 576 Gene3D - 188 281 IPR012677 -
Vian4g02234 576 Gene3D - 2 100 IPR012677 -
Vian4g02234 576 Gene3D - 101 187 IPR012677 -
Vian4g02234 576 Gene3D - 282 386 IPR012677 -
Vian4g02234 576 SUPERFAMILY PABC (PABP) domain 461 574 IPR036053 GO:0003723
Vian4g02234 576 Gene3D - 490 571 - -
Vian4g02234 576 SUPERFAMILY RNA-binding domain, RBD 196 378 IPR035979 GO:0003676
Vian4g02234 576 FunFam Polyadenylate-binding protein 101 188 - -
Vian4g02234 576 Coils Coil 551 571 - -
Vian4g02234 576 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 493 570 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02234 Vian-Chr4 39193557 39196270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02234 9 569 Eukaryotic Initiation Factors Gene Family AT4G34110 46.823 1.04e-171 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02234 K13126 - gmx:100778879 494.582