Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02225 ATGGCTAATCACCACCACCATCATCATGCGCACGACACCAACCTCAAATCCCTTCTCGACACCCTATACTGCTCCGAAGAGCATTGGGAGGAAAACGTCGGGGAAGATGAATTAGACCAAGCAGAGGATGATTACCCAACAGCTAATGATATTACTAATAATAACGCTACCAGTAGCACCACCCTAATTAACTCCCTTCACTCCCCTCATGCGTTGTTCGAAAGCGACATGTTTTGTGACGAACAGGAGTTGACATCGCTGCTGGGGAAAGAAAAACACAACCCTCTAACCACTTTCCTCCGAAGCAACCCTGCGCTCGAGTGTGCTCACAGGGAAGGCGTGGAATGGATGCTCAGAGTGAACGCTCACTACTCCTTCTCTGCTCTCACAGCTCTTCTTGCCGTCAACTACTTTGACCGCTTCCTCTCCACCTTCCGCTTTCAGGATGGCAAGCCGTGGATGACACATCTCACTGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGAGGAGACACAAGTTCCCCTTCTCCTAGACCTTCAGGTGGAAGAGGGTAGATACTTGTTCGAAGCCAAAACGATTAAAAGGATGGAAATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCGCCTACCCCTCTCTCCTTTCTTGATTACATCACAAGAAGACTTGGATTGAAGGATAATCACTGCTGGGACTTCCTTAGGAAGTGCGAAGGCGTTCTTGTCTCTGTCCTCGGAGATTGGAGATTAATGGGTTATCTACCGTCTGAACTGGCAAGTGCGACGATGATACACGTAGTGAAAAGCGTGGAGCCTTGTCTAGAAGGCGAATACCATAGACAACTCTTGGGTATTCTAAGATTCGACAAGGAGAAGGTGAATGAGTGTGGGAAAGTGTTGGAATTGTGGTCAGGATACGAGAAGCAGGGGAGACAATGCATGAAAAGGAAATTTGGAAGCGTTCCGGGAAGTCCAAACGGCGTGATGGAGATGTCGTTTAGCTGTGATAGCTCGAACGAGGAGGTGTGGAGAGTAGTTGCTGGTGGTTCGGTGTGTTGTTCGCCGAAGAAGAGTAGAAGTGAAGACCCCTCTAAGGGTCTTCACATGGGGCACGGGATAACATTGGAATGGGCTTCTGGGCTTGGGCCGCATGCTGCTGTCTGTTGGAAGCTGTCACTGTCCGAAGCAGGCTAA 1200 0.4975 MANHHHHHHAHDTNLKSLLDTLYCSEEHWEENVGEDELDQAEDDYPTANDITNNNATSSTTLINSLHSPHALFESDMFCDEQELTSLLGKEKHNPLTTFLRSNPALECAHREGVEWMLRVNAHYSFSALTALLAVNYFDRFLSTFRFQDGKPWMTHLTAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDNHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYHRQLLGILRFDKEKVNECGKVLELWSGYEKQGRQCMKRKFGSVPGSPNGVMEMSFSCDSSNEEVWRVVAGGSVCCSPKKSRSEDPSKGLHMGHGITLEWASGLGPHAAVCWKLSLSEAG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02225 399 Pfam Cyclin, N-terminal domain 93 210 IPR006671 -
Vian4g02225 399 Gene3D - 211 299 - -
Vian4g02225 399 FunFam D6-type cyclin 93 210 - -
Vian4g02225 399 CDD CYCLIN_AtCycD-like_rpt2 213 302 - -
Vian4g02225 399 SMART cyclin_7 115 203 IPR013763 -
Vian4g02225 399 SUPERFAMILY Cyclin-like 85 210 IPR036915 -
Vian4g02225 399 CDD CYCLIN_AtCycD-like_rpt1 111 207 - -
Vian4g02225 399 PANTHER CYCLINS 85 304 IPR039361 -
Vian4g02225 399 FunFam CYCLIN D32 211 300 - -
Vian4g02225 399 Gene3D - 111 210 - -
Vian4g02225 399 Pfam Cyclin, C-terminal domain 212 321 IPR004367 -
Vian4g02225 399 SMART Cyclin_C_2 212 339 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02225 Vian-Chr4 39054106 39058697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02225 1 319 Core Cell Cycle Gene Families AT4G34160 44.582 1.47e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02225 K14505 - gmx:100811122 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02225 4 39054106 39058697 Vian10g00558 10 5261793 5263097 ECH
Vian4g02225 4 39054106 39058697 Vian1g01628 1 18525532 18526990 ECH
Vian4g02225 4 39054106 39058697 Vian3g00356 3 3426713 3428349 ECH
Vian4g02225 4 39054106 39058697 Vian4g02225 4 39054106 39058697 ECH
Vian7g00693 7 15116639 15118206 Vian4g02225 4 39054106 39058697 PCT