Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02213 ATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAGATGCAATGGTGTTGGTCCAAAAACAACATCCCAAAAGGCATAGGGTTGCTTTGGCTGAACTTCCCAATTTACCAAATCTTATCGTTCCAGGAACTCAAAATCCTTTGAAAGAGAAATCGCGAAATGTGAAGAATCCCAATGCCAAGAAGCCATCTCCCACAACCAATCACTCTTCTTCCCCTCACATTGATGAATCCCTTGTTTCCGATGTCTATGAGTATCTTCATGAGATGGAGATGCAGAAAAAGAGGAGACCAATGGTTGACTACATTGAGAAAGTTCAGAAGCTAGTTACACCAACCATGAGAGCAATTTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTCCCAGACACTCTTCATCTCTCTGTTTCATACATTGATAGGTTTTTGTCTATTAATCCTGTGACTAAATCGAAGCTTCAGTTGCTTGGTGTTTCCTCCATGCTCATTTCATGTAAATATGAGGAAATGGATCCACCTTGTGTGAGTGATTTTTGCAGTATTACTGATTACACATATGACAAGGCAGAGGTTGTTAAGATGGAAGCTGACATACTGAAGTCACTAAACTTTGAAATGGGAAGTCCTACTGTGAACACCTTTCTCAGGAGGTTTGCCGATGTTGTTTCTGACAATAAAATGATTCCAAATTCACATATTGAATTTTTGGGTCGTTATCTGGCTGAATTAAGCTTGTTGGACTATGATTGTTTGAGATTTTTGCCTTCTGTTGTGGCAGCATCAGCTGTATTTCTTTCCAGGTTTATTATCTCGCCTGAAGTGCATCCATGGACTCCTTCTTTGAATGAATGTTCGGGTTACAAACCAGCTGAGTTGAAAGAATGTGTCCGAACCTTGCATGATCTGTACTTGTTACGAAAGGCAGCATCCTTCAAAGCTGTCCGGGATAAGTACAAGCAACAAAAGTTCAAATGTGTTGCAAACCTGCCTTCTCCTCCTTATGTACCAAATTGTTACTTTGAAGACCAGTGA 1041 0.4111 METRAASKRKADAMVLVQKQHPKRHRVALAELPNLPNLIVPGTQNPLKEKSRNVKNPNAKKPSPTTNHSSSPHIDESLVSDVYEYLHEMEMQKKRRPMVDYIEKVQKLVTPTMRAILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSINPVTKSKLQLLGVSSMLISCKYEEMDPPCVSDFCSITDYTYDKAEVVKMEADILKSLNFEMGSPTVNTFLRRFADVVSDNKMIPNSHIEFLGRYLAELSLLDYDCLRFLPSVVAASAVFLSRFIISPEVHPWTPSLNECSGYKPAELKECVRTLHDLYLLRKAASFKAVRDKYKQQKFKCVANLPSPPYVPNCYFEDQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02213 346 SUPERFAMILY Cyclin-like 212 337 IPR036915 -
Vian4g02213 346 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Vian4g02213 346 CDD CYCLIN_AtCycA-like_rpt2 212 326 - -
Vian4g02213 346 Pfam Cyclin, C-terminal domain 212 334 IPR004367 -
Vian4g02213 346 SMART cyclin_7 216 304 IPR013763 -
Vian4g02213 346 SMART cyclin_7 119 203 IPR013763 -
Vian4g02213 346 FunFam Cyclin superfamily protein, putative 209 281 - -
Vian4g02213 346 FunFam G2/mitotic-specific cyclin 97 208 - -
Vian4g02213 346 PANTHER CYCLINS 63 329 IPR039361 -
Vian4g02213 346 Gene3D - 95 210 - -
Vian4g02213 346 MobiDBLite consensus disorder prediction 38 74 - -
Vian4g02213 346 SUPERFAMILY Cyclin-like 78 209 IPR036915 -
Vian4g02213 346 Gene3D - 81 331 - -
Vian4g02213 346 SMART Cyclin_C_2 212 335 IPR004367 -
Vian4g02213 346 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Vian4g02213 346 PIRSF Cyclin_A_B_D_E 2 339 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02213 Vian-Chr4 38919547 38921272 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02213 3 345 Core Cell Cycle Gene Families AT5G43080 54.942 4.04e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02213 K06627 - gmx:547779 538.11