Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02208 ATGCGCACTGCACAATCTCAGCCTCACCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCAACACTCCGTTATGGGTATTACAGGGATTCCTTTATCTTGCTTGGTCCTGCCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAGCAAGGATAAAAATCAAGTCTTTGTTCACACTTTCAATAAGAAGCCCGAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTTGTTGAAGCGTATAAAAGCAAGGGGATTTCTCTGTGGTTAAATCACGGCTCCACCATCCGTCTTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACGTGAAGTTTGAACAACTACAGGATTCACATACGACCTTCCTCAATTCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTCGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAAGCTCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAGATGGGGTAACGCATGTTGACATTTCTTTAGTGGCCCGTGTGTTTGTCTACGTATTACTTCTAGGAGTTATTGCGATTGTTGTTTATCTGATTCTGAAAATTCTTGGAGTTTATGGTGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACGGGCCGAAACTGAGCCATTGATGCGAGGGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGAAGCATGTAGTAGCTCTTCCTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGTGCACAGAGGATTGTCGATGAGGAGAGCAAAGTATGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTGTTTTACATTTAG 1182 0.4137 MRTAQSQPHRWQHAWMLPPLAIWISVSATLRYGYYRDSFILLGPASSRLITTSSVFVKQLQVSSKDKNQVFVHTFNKKPELSSQTNWTASDFFLVEAYKSKGISLWLNHGSTIRLRWEEHTTTGLDKLHGMVVKGDVKFEQLQDSHTTFLNSISLRETVNGKEAEYMVEEDDRYHIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCKLSFFFPDTHYVILTAANNGDGVTHVDISLVARVFVYVLLLGVIAIVVYLILKILGVYGDAEQHSQVTIDVTYRTSNVVATRAETEPLMRGEENRMSYGTNAKDDKQNSEACSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESKVCPICRRLIHKVRRLFYI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02208 393 Pfam Domain of unknown function (DUF4792) 73 138 IPR032008 -
Vian4g02208 393 ProSiteProfiles Zinc finger RING-type profile. 341 381 IPR001841 -
Vian4g02208 393 SUPERFAMILY RING/U-box 331 387 - -
Vian4g02208 393 PANTHER OS05G0521000 PROTEIN 20 391 - -
Vian4g02208 393 Pfam Domain of unknown function (DUF4793) 164 265 IPR032010 -
Vian4g02208 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
Vian4g02208 393 SMART ring_2 341 380 IPR001841 -
Vian4g02208 393 Pfam Zinc finger, C3HC4 type (RING finger) 338 387 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02208 324 391 C3H Transcription Factor Family AT1G62370 33.824 3.82e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02208 - - gmx:100794488 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02208 4 38853932 38856259 Vian4g02208 4 38853932 38856259 ECH