Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02197 ATGGCTCTCCAAGCTCTTCAATCACCCACCGCTGCCAACCCATCGTTCACTCCCTTCGAAGAAGACACTCTCACTTACTTAGACACGCCTTGGGCTAAGGGAAAGCGTTCTAAGCGTCCCCGGATGGACCAACACCCTTCATGCACCGAGGAGGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCGTGCTCCCGCTCCCATCCCCACCGCCGCCAAGCCTGCTCTCTCCGACAACAACTCCGCGCCTCTCCCCGCCAAACTCTCCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGGCACAAGGCCAGCCACCGTAAGTTATCTGGCGCCGGCGAAGACCAGCCCACCTCCTCCAGCGTCACCACGACTTCTGCCTCCAACGGCGGAGGTAGGACCCACGAGTGCTCCATATGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGCCACTACGAAGGCGGCGGCGGTGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTGCCGGCTTTTCCGGACTTTCCAACGAGGTTCTCGACGGATGAGGAGGTTTCCAGCCCCCACCCATCGAAGAAGCCCCGTCTCCATCTGACCATCCCCAAGATTGAAATCCCTCGGTCCTGA 717 0.5997 MALQALQSPTAANPSFTPFEEDTLTYLDTPWAKGKRSKRPRMDQHPSCTEEEYLALCLIMLARGGSRAPAPIPTAAKPALSDNNSAPLPAKLSYKCSVCNKAFSSYQALGGHKASHRKLSGAGEDQPTSSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFSTDEEVSSPHPSKKPRLHLTIPKIEIPRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02197 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 201 IPR044653 GO:0003700
Vian4g02197 238 SUPERFAMILY beta-beta-alpha zinc fingers 94 167 IPR036236 -
Vian4g02197 238 MobiDBLite consensus disorder prediction 208 238 - -
Vian4g02197 238 MobiDBLite consensus disorder prediction 122 143 - -
Vian4g02197 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Vian4g02197 238 SMART c2h2final6 145 167 IPR013087 -
Vian4g02197 238 SMART c2h2final6 94 116 IPR013087 -
Vian4g02197 238 Gene3D Classic Zinc Finger 92 167 - -
Vian4g02197 238 MobiDBLite consensus disorder prediction 116 144 - -
Vian4g02197 238 Pfam C2H2-type zinc finger 94 118 - -
Vian4g02197 238 Pfam C2H2-type zinc finger 145 168 - -
Vian4g02197 238 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Vian4g02197 238 MobiDBLite consensus disorder prediction 215 238 - -
Vian4g02197 238 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vian4g02197 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02197 Vian-Chr4 38763102 38763818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02197 1 230 C2H2 Transcription Factor Family AT1G27730 52.301 3.92e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian4g02197 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02197 - - vra:106759864 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02197 4 38763102 38763818 Vian4g02197 4 38763102 38763818 ECH