Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02178 ATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCGGTCGAGACGTTGGGCTGCACAACTGTTATTTGCAGTGACAAAACTGGTACGCTAACTACTAACATGATGTCAGTGGCGAAGGTATGTGTTGTTGAATCTGCAAATCGTGGCCCTGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGCATAATATTTGACAGTACAGGGATGCAGCTTGACTTTCCTGCTGAATTGTCTTGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAATTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCCTGGCAGAAAAGGTTGGTCTCCCTGGTTTCGATTCCTTGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACATGTTTTGGAGTTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCCGGAACCAGATGCATATTTTGTTCTCAAAAGGTGCCCCAGAAAGTATAATACCTAGATGTTCAACCATTCTGTGCAACAGTGATGGTTCCATTGTGCCACTTACAGCTGATATTCGAGCAGAGTTGGACTCAAGGTTCAACAGTTTTGCAGGAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTGAAATGGATGCCCTCAGTTCAACAGTCATTGTCCTTTGATGATGAGAAGGATCTTACATTTATTGGGTTGGTTGGGATGCTGGATCCTCCACGAGATGAAGTAAAAAATGCAATGCTTTCCTGTATGACTGCTGGCATCCGTGTTATAGTCGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATTGATTTTTCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTGCACCTCTGCAGCAAACAATAGCATTGCAACGTATGGCACTTTTTACTAGGGTTGAGCCTTCTCATAAAAGGATCCTGGTAGAAGCATTGCAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCAGCACTTAAGAAGGCGGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCTTCAGACATGGTGCTGGCTGATGACAACTTTGCCTCTATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATTGGCGAAGTAGTTTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGATACCCTTGCCCCTGTCCAATTGCTTTGGGTCAATTTGGTTACTGATGGATTACCTGCCACTGCTATTGGCTTCAACAAACAAGATTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCCGTTGTTTCTGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCTACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATGGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTTATAGCTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTCAGTGAAAATCAATCTCTTCTGGTTATCCCTCCTTGGAGTAACATGTGGCTTGTTGCTTCTATAATCATAACTATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCGATTCTTTTCTCTGTAACACCGTTATCTTTGGCTGACTGGACAGTTGTCCTCTATCTTTCGTTACCTGTTATAGTCATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCATTGGATTTAGATTCAGGTTATGGTTCAGGAGGTCCGATTTACTTCCAAAAAAAGATTTACATGAAAAGTAA 2043 0.4214 MARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVESANRGPVVSEYSVSGTTYAPEGIIFDSTGMQLDFPAELSCLLHMAMCSALCNESTLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFDSLPSALNMLTKHERASYCNHYWEEQFRKIHVLEFSRDRKMMSVLCSRNQMHILFSKGAPESIIPRCSTILCNSDGSIVPLTADIRAELDSRFNSFAGKETLRCLALALKWMPSVQQSLSFDDEKDLTFIGLVGMLDPPRDEVKNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDFSEHSYTASEFEELAPLQQTIALQRMALFTRVEPSHKRILVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYSDGGPKLPYTELMNFYSCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIIITMLLHILILYVHPLSILFSVTPLSLADWTVVLYLSLPVIVIDEVLKFFSRNPIGFRFRLWFRRSDLLPKKDLHEK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02178 680 FunFam Calcium-transporting ATPase 34 271 - -
Vian4g02178 680 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 366 659 - -
Vian4g02178 680 PRINTS H+-transporting ATPase (proton pump) signature 342 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g02178 680 PRINTS H+-transporting ATPase (proton pump) signature 401 426 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g02178 680 PRINTS H+-transporting ATPase (proton pump) signature 370 386 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g02178 680 ProSitePatterns E1-E2 ATPases phosphorylation site. 26 32 IPR018303 -
Vian4g02178 680 Gene3D - 34 269 IPR023299 GO:0000166
Vian4g02178 680 NCBIfam HAD-IC family P-type ATPase 340 455 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g02178 680 PRINTS P-type cation-transporting ATPase superfamily signature 393 405 - -
Vian4g02178 680 PRINTS P-type cation-transporting ATPase superfamily signature 24 38 - -
Vian4g02178 680 PRINTS P-type cation-transporting ATPase superfamily signature 264 275 - -
Vian4g02178 680 PRINTS P-type cation-transporting ATPase superfamily signature 286 296 - -
Vian4g02178 680 PRINTS P-type cation-transporting ATPase superfamily signature 370 389 - -
Vian4g02178 680 SFLD Haloacid Dehalogenase 5 422 - -
Vian4g02178 680 Pfam haloacid dehalogenase-like hydrolase 262 384 - -
Vian4g02178 680 Pfam Cation transporting ATPase, C-terminus 454 653 IPR006068 -
Vian4g02178 680 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 31 268 IPR023299 GO:0000166
Vian4g02178 680 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 655 IPR023298 -
Vian4g02178 680 FunFam Sodium/potassium-transporting ATPase subunit alpha 263 409 - -
Vian4g02178 680 Pfam Cation transport ATPase (P-type) 94 203 - -
Vian4g02178 680 PANTHER CALCIUM-TRANSPORTING ATPASE 1 656 - -
Vian4g02178 680 Gene3D - 387 659 - -
Vian4g02178 680 SUPERFAMILY HAD-like 257 418 IPR036412 -
Vian4g02178 680 Gene3D - 270 386 IPR023214 -
Vian4g02178 680 SFLD p-type atpase 5 422 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02178 Vian-Chr4 38599173 38612564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02178 1 674 Primary Pumps ATPases(2) AT1G10130 83.680 0.0 1185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02178 K05853 - gmx:100783509 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02178 4 38599173 38612564 Vian4g02178 4 38599173 38612564 ECH