Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02177 ATGGCGGTTATGGATTACAGAGGCCTTCTGCTTCTCCTTATTCTCTTTCTTCCTTCATCAAACTTTGCAACGTCTCACTCCATAGTGCGCTTCCTTCCTGGCTTCCATGGACCCCTTCCTTTTCTACTTCAAACTGGGTATGTGGAAGTGGGTGAAAGTGAAGCAGAGGAGAATGCAGAACTGTTCTACTATTTTATTGAGTCGGAGAATGACCCCAAAGGGGACCCTCTTCTTCTTTGGCTAACCGGGGGACCTGGTTGCTCCGCTTTTTCTGGGTTAGTTTTTGAAATAGGTCCACTGTCCTTTGAAAACCAGGAATACAATGGGAGCTTACCTAATTTGACATTGAAGACACAATCATGGACAAAGGTAAGTAGCATTATATTTGTGGATCTGCCAGCGGGTACAGGCTTCTCTTATCCCAAAACAGAACTTGCTGTTAATCAAAGTGCCTCCAAGCTTGTTCGCCATGCTCATCAATTTCTTAGGAAGTGGCTAATTGATCATCCGGAATTTCTCTCAAATGAGGTGTACATTGCTGGCGACTCATTCTGTGGCCTTCCTATACCAGTTATTGTTCAAGAAATTTCATACGGAAACAAAGGTGGTATCCAACCATGGATAAATCTCCAGGGATACATTCTGGGAAATCCCATAACAACATCCACTGAAAAAAACTACGAAATTCCGTTTAATCATGGCATGGCACTCATTTCTGATGAACTCTACCAGTCACTGCAAAGGAATTGCAGAGGAGAGTATCAAAACATAGACCCAACAAACGCATTATGTGCAAGGGACATGCAGTCCTACGAGGAGTCTATTTCAGGGATTGCAATTGGGCATGTTTTGGAACCCGATTGTGAGGAGTCTGCTCTGCGTAATCCAATTCAAGATACTTGGAGCTGCAGGAGGTCTCTTGCTCATGAATCCTATCCTCTCACAATGCCACCTTTAAATTGTAGGGCTCATGCATATGTCCTTTCTAGCTATTGGGCCAATGATGATGATGTCCGCAAAGCACTGCATATTCGGAAGGGAACTAAAGGGAAATGGAAGCGCTGTAACTATGATATACCTTTTAAGACTGATATCTCTAACAGCTTCCAATATCACGTCAATCTCAGCAGAAAAGGCTACCGTTCATTGATATACAGTGGGGATCATGACATGGTAGTTCCATTCCTGTCTACACAAGCGTGGATAAGAGCTTTAAACTATTCCATCGTCTCTGACTGGAGGCAGTGGTATTACAATGGCCAAGTCGCAGGATACACGAGAACTTACTCAAATCAGATGACATTTGCGACTGTGAAGGGTGGAGGGCACACAGCTCCGGAGTTCAAACCTGAGGAATGTTTAGCCATGTTCATGAGATGGATATCTAATAAGCCACTCTGA 1401 0.4383 MAVMDYRGLLLLLILFLPSSNFATSHSIVRFLPGFHGPLPFLLQTGYVEVGESEAEENAELFYYFIESENDPKGDPLLLWLTGGPGCSAFSGLVFEIGPLSFENQEYNGSLPNLTLKTQSWTKVSSIIFVDLPAGTGFSYPKTELAVNQSASKLVRHAHQFLRKWLIDHPEFLSNEVYIAGDSFCGLPIPVIVQEISYGNKGGIQPWINLQGYILGNPITTSTEKNYEIPFNHGMALISDELYQSLQRNCRGEYQNIDPTNALCARDMQSYEESISGIAIGHVLEPDCEESALRNPIQDTWSCRRSLAHESYPLTMPPLNCRAHAYVLSSYWANDDDVRKALHIRKGTKGKWKRCNYDIPFKTDISNSFQYHVNLSRKGYRSLIYSGDHDMVVPFLSTQAWIRALNYSIVSDWRQWYYNGQVAGYTRTYSNQMTFATVKGGGHTAPEFKPEECLAMFMRWISNKPL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02177 466 FunFam Carboxypeptidase 369 463 - -
Vian4g02177 466 Gene3D alpha/beta hydrolase 23 297 IPR029058 -
Vian4g02177 466 SUPERFAMILY alpha/beta-Hydrolases 29 465 IPR029058 -
Vian4g02177 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 Pfam Serine carboxypeptidase 33 463 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 Gene3D - 320 466 - -
Vian4g02177 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 450 IPR001563 GO:0004185|GO:0006508
Vian4g02177 466 FunFam Carboxypeptidase 320 465 - -
Vian4g02177 466 FunFam Serine carboxypeptidase-like 11 23 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02177 Vian-Chr4 38592572 38597401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02177 23 57 Calmodulin-binding Proteins AT2G22960 57.143 4.18e-06 45.4