Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02165 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACGGTACCGTTTTGGACTCCACTATCTCCGTAGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGCCCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTTGGTCCTTTTCCCTGTCTTTCCAGAAACTCTTGTTTATTCGAGCTTCAAGAAACTGAAACCGTAGAAGTAAAGAAAGCAATTCCAAGGAGTGAACAGCAACACCAAAACCAGTTACACAATAGAGGCGGAGGTAACTATAGTAGTAGTTGTGACTGTAGCAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTGGGGGGTTTACCTGCTGGAATATCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATCACCTTTGATTCCGAGGAATCGGTTCAAAGCGTTATGGTGAAGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCTAAAGAGGGGAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAATATGCTTCCGGGTCTTGCTCCTTTGCCGTGGTATGGTAGTGACGGAGTATATGCATATGGTTCTAATGCTTACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTCTGAAGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTATTCCAAACTTAGCGTGGGGTAGGATTGGAATAGTAGGTGGTGGTCTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACGACGTTGCATCATGGTGTAAAGCAGAATGTTGTGGACTCTTCCAGTTTGAAAGGGAGCAATGGTGAAATATCTAGCTGA 1167 0.4679 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVGPFPCLSRNSCLFELQETETVEVKKAIPRSEQQHQNQLHNRGGGNYSSSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLAPLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSEASRNFWYGPMMAGPQACQVPYASAIPNLAWGRIGIVGGGLGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLHHGVKQNVVDSSSLKGSNGEISS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02165 388 MobiDBLite consensus disorder prediction 222 243 - -
Vian4g02165 388 MobiDBLite consensus disorder prediction 222 236 - -
Vian4g02165 388 CDD RRM2_Hrp1p 141 218 - -
Vian4g02165 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 217 IPR000504 GO:0003723
Vian4g02165 388 SMART rrm1_1 11 82 IPR000504 GO:0003723
Vian4g02165 388 SMART rrm1_1 141 213 IPR000504 GO:0003723
Vian4g02165 388 MobiDBLite consensus disorder prediction 109 128 - -
Vian4g02165 388 MobiDBLite consensus disorder prediction 105 128 - -
Vian4g02165 388 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 317 - -
Vian4g02165 388 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Vian4g02165 388 SUPERFAMILY RNA-binding domain, RBD 136 225 IPR035979 GO:0003676
Vian4g02165 388 Gene3D - 136 224 IPR012677 -
Vian4g02165 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 107 IPR000504 GO:0003723
Vian4g02165 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Vian4g02165 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 208 IPR000504 GO:0003723
Vian4g02165 388 FunFam RNA-binding protein 1 136 226 - -
Vian4g02165 388 Gene3D - 8 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02165 Vian-Chr4 38511911 38513156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02165 12 278 Eukaryotic Initiation Factors Gene Family AT2G36660 23.050 4.58e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02165 K14411 - gmx:100816822 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02165 4 38511911 38513156 Vian4g02165 4 38511911 38513156 ECH