Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02156 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGCTTCTCTGAAGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCGGCACAATTGCCAGGAAGAACTGATAACGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCAGCGCAAGGAACTGCAGGCACGTAGCAAAGAAAACGGTGTCGTTAAGCAGGAGAACAATTCTTCACTCTTGCTTCAGGAAAACATTGTTCAACAACAGCCTTGTTGGCCACAGATTCCGGCGCCGCCACTTTCGCCGTACACAAGTCAAAATCCAAGTTTCAACGACCAAGACTCTATTAGAAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATAGGGGTGAATGTTCAGTTTCCACAGGGTTCTCTCACATCAACACAACAAATTCAAGAGGAGCAAGTCCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGGCAACAGCCAAGTACAATTTGGTCAGAGTAATGAGTACTGTTCTGAGTTGGTGCAAGGAGAAGTGAGTTTCAGTTCCGCAGCTATTGGGGAAATGGTTTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTGTATGGAGAGGAAATGATTAGCGATAAGATAATGGGTGGTTGTGCATCTTCATGTTGTGGGCAAAGTACTAATTGGGACGAGACAAGTTCTTTGATTTATCCTCCTCTTGTTGCTTCGAGTTTCGAGGGTGTGAGGGAAGAGATGCCACGAGAAAATGCTTTTCAAGAGTTGAGCTACCCATAG 1023 0.4585 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKELQARSKENGVVKQENNSSLLLQENIVQQQPCWPQIPAPPLSPYTSQNPSFNDQDSIRKLLIKLGGRFSDDYQPIGVNVQFPQGSLTSTQQIQEEQVHVSSSGCMNSIGNSQVQFGQSNEYCSELVQGEVSFSSAAIGEMVSTNDYSQRLLGGLEFLYGEEMISDKIMGGCASSCCGQSTNWDETSSLIYPPLVASSFEGVREEMPRENAFQELSYP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02156 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vian4g02156 340 FunFam Transcription factor RAX3 70 144 - -
Vian4g02156 340 Gene3D - 7 68 - -
Vian4g02156 340 CDD SANT 71 113 IPR001005 -
Vian4g02156 340 PANTHER OS09G0431300 PROTEIN 1 248 - -
Vian4g02156 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian4g02156 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian4g02156 340 SMART sant 13 64 IPR001005 -
Vian4g02156 340 SMART sant 67 115 IPR001005 -
Vian4g02156 340 Gene3D - 70 143 - -
Vian4g02156 340 CDD SANT 16 62 IPR001005 -
Vian4g02156 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vian4g02156 340 FunFam Transcription factor RAX3 7 68 - -
Vian4g02156 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vian4g02156 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vian4g02156 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02156 Vian-Chr4 38397078 38398310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02156 1 186 MYB Transcription Factor Family AT3G49690 66.667 5.12e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian4g02156 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02156 K09422 - gmx:100790407 588.571