Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02154 ATGGTCTTAGGTACCTCTAACCTTCAACTAGGTCTTGGTCTTGGCCTCCAAGATCAGTCACAAGAAACATGCATGAAGAGCCATGAACGAAGGCAAAGACAAAGACAAAGCCAGAAAAAGAAGGATTCCGATGAATGTTTTGATTTTCACCGTCGTGCTTCTCCTCCAAGTGCAGTGTCTTCGTTTCTCAACTCATCAAGCATCATCAAGAGAGAGCGAGATGAGTTGGCCGGAGAAGAATTTGAGTTAGAGGTAGAGAAGTTTCCCTCAAACTTAAGAGTTGTGGATCTTGATGAATATGGTTACTCCAAGAAGAAGCTGAGGCTCACCAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAAGAGCATTCTACTCTCACTCTGACACAGAAGCAAGGATTGGCAAAGAAACTGAATCTGCGGGCGAGACAAGTGGAAGTATGGTTTCAGAATAGGAGAGCAAGGACAAAACTGAAGCAAACGGAAGTGAACTGTGAGATACTGAAAAAGTGCTGTGAAAGTCTAACAGAAGAGAACAAGATGCTGCAAAAAGAGTTGGAAGAGCTTAAATCGATGAAAACAGCATTGCAGGGACCCCTTTTTATGCAGCTTCCAGTGCCAACCCTTACAATATGCCCTTCCTGTCCGAGAATTTCCGGTGGCAGCGCCGCCACCACCAACAGTGCCTCCTCTCCTACCACCACCACCACCTTGCTTGTGGGACCAAAGCCCCGTCACGATCACCACTTCTATAAAAATAACTATACATTCACACAATCATCTGCAGCTTGCTAG 798 0.4524 MVLGTSNLQLGLGLGLQDQSQETCMKSHERRQRQRQSQKKKDSDECFDFHRRASPPSAVSSFLNSSSIIKRERDELAGEEFELEVEKFPSNLRVVDLDEYGYSKKKLRLTKEQSAVLEDSFKEHSTLTLTQKQGLAKKLNLRARQVEVWFQNRRARTKLKQTEVNCEILKKCCESLTEENKMLQKELEELKSMKTALQGPLFMQLPVPTLTICPSCPRISGGSAATTNSASSPTTTTTLLVGPKPRHDHHFYKNNYTFTQSSAAC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02154 265 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Vian4g02154 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 235 - -
Vian4g02154 265 MobiDBLite consensus disorder prediction 23 58 - -
Vian4g02154 265 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Vian4g02154 265 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Vian4g02154 265 SMART HOX_1 103 164 IPR001356 GO:0003677
Vian4g02154 265 Coils Coil 159 196 - -
Vian4g02154 265 CDD homeodomain 104 161 IPR001356 GO:0003677
Vian4g02154 265 MobiDBLite consensus disorder prediction 223 241 - -
Vian4g02154 265 Pfam Homeobox associated leucine zipper 160 194 IPR003106 GO:0006355|GO:0043565
Vian4g02154 265 SMART halz 160 205 IPR003106 GO:0006355|GO:0043565
Vian4g02154 265 Gene3D - 99 165 - -
Vian4g02154 265 MobiDBLite consensus disorder prediction 223 244 - -
Vian4g02154 265 Pfam Homeodomain 104 158 IPR001356 GO:0003677
Vian4g02154 265 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02154 Vian-Chr4 38365527 38367977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02154 98 265 Homeobox Transcription Factor Family AT4G37790 58.824 1.03e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian4g02154 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02154 K09338 - gmx:100790927 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02154 4 38365527 38367977 Vian4g02154 4 38365527 38367977 ECH