Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02143 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGGAGCGCCTGAAGAAGCTCGTGATGAAAATGTGTTAGTGTTTGAAGCAACCAAGCTTCTAAGGGGACTTTCCTCTGCTTACTCTAAACAAGGTACCAAAGGGCTCAACCAAGATGCTGCAACACTTTGTCAGGTTTATGGGACGGCAAACGCAGCATTCTGTGGAGTTTTTGATGGGCATGGAAGGAATGGTCACATAGTGAGCAAAATAGTGAACAGCCGTTTGTGTTCATTCATAGTGGACCAAAAAAAAGTGCATGCAAAGATTGAAAAGAAGATCATGGTAAGGCATGCGGAGACAGTTGAAGACGACTCACAAGCTCTACTAAACAAGAATTTTCAAGAATGGAAAGAAGCCATTGTTGATGGTTTCAGGGTGATGGACAAGGAGGTGAAGCTACAAGAGAATCTGGACTGCTCTTGCAGTGGAACTACGGCTGTAGTTGTCATAAGACAGGGTGAAGATCTTGTCATAGCAAACCTTGGTGACTCGAGAGCAATCTTGGGGACAATCTCTGACGGTGAAATCATGGCCATTCAATTGACCACGGATATGAAACCTGGATTACCATGCGAAGCAGCACGAATAAAAAGTTGCAATGGCCGTGTATTTGCCCTGAAGGAAGAACCACACATCCAGCGAGTGTGGTTACCAGATGAGAACTCTCCAGGTCTGGCCATGTCTAGGGCTTTTGGAGATTTCATGCTCAAAGACCACGGCATCATTGCCATCCCTGACATTTCGCATCGCACTCTAACATCTAGCGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGCAACGAGGAGGTTTCCTCAATTGTGTGGGCAGCAGACACTGAAAATGAAGCAGCAAGGGCTGTTGTGGAAGCAGCAGCTTTAGCATGGAAAAGCAAGTATCCTTCTAAGTTAGATGACTGCACTGCCGTTTGCCTCTTCCTACAGAAGAAGCCACAGTTTCTACCCGTCAAAAGTGGAAATCCCTCATAA 1041 0.4563 MGICISSESSAIHGAPEEARDENVLVFEATKLLRGLSSAYSKQGTKGLNQDAATLCQVYGTANAAFCGVFDGHGRNGHIVSKIVNSRLCSFIVDQKKVHAKIEKKIMVRHAETVEDDSQALLNKNFQEWKEAIVDGFRVMDKEVKLQENLDCSCSGTTAVVVIRQGEDLVIANLGDSRAILGTISDGEIMAIQLTTDMKPGLPCEAARIKSCNGRVFALKEEPHIQRVWLPDENSPGLAMSRAFGDFMLKDHGIIAIPDISHRTLTSSDQFIVLASDGVWDVLSNEEVSSIVWAADTENEAARAVVEAAALAWKSKYPSKLDDCTAVCLFLQKKPQFLPVKSGNPS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02143 346 CDD PP2Cc 37 331 IPR001932 -
Vian4g02143 346 Pfam Protein phosphatase 2C 103 309 IPR001932 -
Vian4g02143 346 Gene3D - 27 334 IPR036457 -
Vian4g02143 346 SUPERFAMILY PP2C-like 32 332 IPR036457 -
Vian4g02143 346 PANTHER PROTEIN PHOSPHATASE 37 329 IPR015655 GO:0004722|GO:0006470
Vian4g02143 346 ProSiteProfiles PPM-type phosphatase domain profile. 36 331 IPR001932 -
Vian4g02143 346 SMART PP2C_4 29 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02143 Vian-Chr4 38267567 38269147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02143 1 336 PP2C-type Phosphatase Gene Family AT5G26010 49.713 2.83e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02143 - - gmx:100795893 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02143 4 38267567 38269147 Vian4g02143 4 38267567 38269147 ECH
Vian7g00608 7 13980734 13983387 Vian4g02143 4 38267567 38269147 PCT