Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02137 ATGGAGAGAGATATGTATATCGCTCCACTGGAGATTTCTGGTCGAGGTGCTACAGTAATAGATGAAATATCCCAGCATCCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCATATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTACAAGTAATGTCCATGCTGATGCTTGCTTCATTAGTCCATCAACTATTGCTGACTCCACTCCATTAGTTACATCACGGAGAAAGACTATTGTGGGAGATGCCTCAAATCCCATGGCGAACTCTGAGTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGATAGAATTGGTCTTGAAGAAAATTTGGAGAATTCAGCCGCCGCCCTAGCTCCCTCAATCTTTTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCATGGTACTTCAAACCCTTGGTTTGGAACTTTTGAGGAGTGTGCTTACAATGAAATTCCTAGTAAGTGGAATGCTAACAAATTTCCTAAAGCTCCAGAGAATGATGGAACTTGTCAGCCCTATTCTTCTGTGGCAAACCTGGATCCAAATGTATGGGCAACATCAAACGTTGCAAACATGGCCAACTATGCTCACTATTCCTCTAATTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGTGCTCAGACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAAATTTCTATGAATTTGGGTGGTAATAAACATGCACAAATTTCACCGGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTCAAAATCTGGAACAGTTAAACTATTCAGCCCCTGGTAATAGAGCAGGTGGACACAAGTCAACTTCAGCGTTTCCACCCAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCTTTGCAAAGGCAGGCTGCTGAATCTAAGAAAGCTCAACTGCTGGCACTTCTACAACTGGTGGACAGTCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAGATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAAAAAATCGTGCACGGAAGACAGTGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCGAAAGATGCAGAGAAGCATTTACTTGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATAACCATGGGAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1689 0.4316 MERDMYIAPLEISGRGATVIDEISQHPTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPTSNVHADACFISPSTIADSTPLVTSRRKTIVGDASNPMANSEFQEHLVGGVPLTPASLAAILADRIGLEENLENSAAALAPSIFSTGALEVFFNNLHGTSNPWFGTFEECAYNEIPSKWNANKFPKAPENDGTCQPYSSVANLDPNVWATSNVANMANYAHYSSNFSKELSLSLATSTAAGQCSDVTCSNMTPCMNGTISCSSSREISMNLGGNKHAQISPEVLESRYLLGIQEILAQIARYSFQNLEQLNYSAPGNRAGGHKSTSAFPPKRNILTDHNASSVYESHAESPLQRQAAESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFKKSCTEDSEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNNHGNRISMSNQRFNVN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02137 562 Pfam Associated with HOX 283 420 IPR006563 -
Vian4g02137 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Vian4g02137 562 SMART prehox3 277 421 IPR006563 -
Vian4g02137 562 SMART HOX_1 463 527 IPR001356 GO:0003677
Vian4g02137 562 Gene3D - 466 546 - -
Vian4g02137 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Vian4g02137 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 212 545 - -
Vian4g02137 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Vian4g02137 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02137 Vian-Chr4 38213483 38215623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02137 229 547 Homeobox Transcription Factor Family AT4G32980 55.590 3.11e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian4g02137 POX 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02137 - - gmx:100820354 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02137 4 38213483 38215623 Vian4g02137 4 38213483 38215623 ECH
Vian7g00604 7 13948514 13951290 Vian4g02137 4 38213483 38215623 PCT