Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02134 ATGACTTCTGTTTCTCTGAACCTACCAGCTCCTACTATACAAGATCAAACTCATCTCTTCATTTCTCCTGATAATCACCAATCAACTCTCTCATGTTACTCCTTCTTCCACATATTAGACCAAAGCCAGGCCAAAGATATCAGATACTTCAGACATGCTGATCAAGAGGATGTGAAGTTTGTATTTCATGGTGGATCATCAGATAATCAGCAATTTGCGTCGTCCACTCAACGTAATAAGTCGGTTATGGCGGATCCAAATAGCAGCTCGTGTGGCCACCTAGCAGAAGAGGAAATAGAGGAGCAAGAGAACAGAAGAGGAAATTACGAGTATGAAAAATGGTTGTCTTCAAATGTGAGGTTGACGAGAAAAATGATGAGCCCACCTAGCAATAATTTAGCCACAAACAAAGCATTCGATATAATTAGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGTGGCATTCGGCAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCGAATAGTTGCATGGATGCAAAGTCTAGAGTTCGTCATCAGAAGGAAAAGAAGTGTCGTAGAAACCATTTTGCAGGGTTCAAGAATAAGTCCAAGACTGATAGAGGAACATTATCTGAGGAGCAGAAAGTGAGGATTCATTTGAAAGATTTTTCTGTAAGTTTGAGGGATGATTCAGCTTTGAAGCAAGAGTCTCCAATGGATGAAGTAGCTCAGGCAGCGATGCTTCTTATGGATTTATCTAGAGGCTTTCTTTACTAA 813 0.4194 MTSVSLNLPAPTIQDQTHLFISPDNHQSTLSCYSFFHILDQSQAKDIRYFRHADQEDVKFVFHGGSSDNQQFASSTQRNKSVMADPNSSSCGHLAEEEIEEQENRRGNYEYEKWLSSNVRLTRKMMSPPSNNLATNKAFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANSCMDAKSRVRHQKEKKCRRNHFAGFKNKSKTDRGTLSEEQKVRIHLKDFSVSLRDDSALKQESPMDEVAQAAMLLMDLSRGFLY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02134 270 CDD ZnF_GATA 144 181 IPR000679 GO:0006355|GO:0043565
Vian4g02134 270 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
Vian4g02134 270 ProSiteProfiles GATA-type zinc finger domain profile. 143 175 IPR000679 GO:0006355|GO:0043565
Vian4g02134 270 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 132 - -
Vian4g02134 270 SMART GATA_3 139 192 IPR000679 GO:0006355|GO:0043565
Vian4g02134 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 181 - -
Vian4g02134 270 ProSitePatterns GATA-type zinc finger domain. 145 170 IPR000679 GO:0006355|GO:0043565
Vian4g02134 270 Gene3D - 142 207 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02134 Vian-Chr4 38186064 38187129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02134 131 270 C2C2-Gata Transcription Factor Family AT5G49300 37.857 1.42e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian4g02134 GATA 4.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02134 - - gmx:102659929 300.441