Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02127 ATGAAGGGAGGTACAGTGAAAGAGGAAGAAACATTCGCATTTGCAGCTGCTGCTCCTTCTTCACCTTCATCCTCGACTTCCAACCTCTTCCCGCAACCAAGGGAAGGGTTGCACGATGTGGGTCCACCTCCGTTTCTCACCAAAACCTTCGACGTGGTCGAAGACCCTTCCACCAACGACATCGTCTCCTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAACACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGTTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTAACACAGATGCAGTCACACGAGGGAGGAAGTGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAAATTGTGAAGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTAGCTAAGGCACTCGACAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGAAAGAGTTGCAAGGTGGTAGAAGAAAAAGGAGATTAACTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGCGGCATTGCCTGTTGAAGAAGAATCCACTAATATTGAGTCGCACATGGAGTCTCTTCTCTCAGCTGTTTGTGATGATGATCCATTAGAATCGAGCTCTGAATTAGAAGACCCGATTTTAGGTTCAGTTCCTACAACTGGTGGTGGTAGTGATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGATTTACTGAACCAAGACTTGGTTGCTGCGAACCATGAGGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1131 0.4704 MKGGTVKEEETFAFAAAAPSSPSSSTSNLFPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTQMQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALDNQTFIQQFLHRNAQKKELQGGRRKRRLTASPSVENLQQDPVIDAALPVEEESTNIESHMESLLSAVCDDDPLESSSELEDPILGSVPTTGGGSDLGVVSDAIWEDLLNQDLVAANHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02127 376 MobiDBLite consensus disorder prediction 231 255 - -
Vian4g02127 376 Coils Coil 162 182 - -
Vian4g02127 376 MobiDBLite consensus disorder prediction 286 305 - -
Vian4g02127 376 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vian4g02127 376 MobiDBLite consensus disorder prediction 1 34 - -
Vian4g02127 376 FunFam Heat shock transcription factor 1 38 135 - -
Vian4g02127 376 MobiDBLite consensus disorder prediction 17 32 - -
Vian4g02127 376 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02127 376 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02127 376 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02127 376 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02127 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 264 IPR027725 -
Vian4g02127 376 Gene3D - 38 135 IPR036388 -
Vian4g02127 376 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian4g02127 376 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02127 Vian-Chr4 38106787 38108132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02127 31 376 HSF AT2G26150 51.429 5.49e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian4g02127 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02127 K09419 - gmx:100794605 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02127 4 38106787 38108132 Vian4g02127 4 38106787 38108132 ECH