Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02118 ATGTCTCTTCAATACCCAGGTGCCGCCCTGCCGCAGAACGTCACAATGGTAGCCGTCGACAAGGACAAGAACAGTGCCCACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTAGTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTCATGATGAAAGAAGCCGTAATTGATGATGCGGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATCGTGTATCAGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTATGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAGTTTAACTACACCGAAACCAGTTCCTGTGCCGCCAAGTCCGCCCAGTCCAGGAGAAGGACCATTAAGGGGACAACTACCTAGAAGTAGGGGCACTTACGAAGTAGCAGCAGAACCAATGAGAATAATACAGGCTAGAGAAAGACCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCCCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGTGGATTTCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGACATATTCTCCTCAATCCGCAAAAGAACTAGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAAAAGGCTATAGCCAAAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCATTATCTACGTTGGCTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGAGGATACGGACCTGTGTATAAAGGCCACCTTGATCACACCCCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGATTAAGATTCTTCTAAAGAAACATATCAGAAGTGGTCAATCCCTCGATATCTCATCTTTGGCCCCACTAAGGATATTGGATTCCCCTGATAAAGTAATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGATGCTTAGTGTATGAGTACCTGGATAACGGTAGCTTAGAAGACAGACTGTTCCGGAAAAACAACAGCAAACCAATTCCATGGAATAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAACCCATCGTGCACCGAGACCTCAAACCATCTAACATTCTCGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTAATTCTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAATCGGGGATTCTAACAACAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCCATGGGTCTTGCTCACCTAGTTAGGAAGGCAGTTGAAAAGGGCAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCGGTGGAAGAGGCTCTGTCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAACAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTCAAGCAGTGATGATAATCTATAG 2118 0.4514 MSLQYPGAALPQNVTMVAVDKDKNSAHAFRWAVNHLDNPVIIAVHVKHKNFSHHVTNVFPPDEDDVVNIFNSLRGICTRKAVMMKEAVIDDADVVRGLLEFANRNLIHSIVYQDIPTAMIKSAPDFCSVYIISKLKIMSARSAVRSLSKSLTTPKPVPVPPSPPSPGEGPLRGQLPRSRGTYEVAAEPMRIIQARERPKSTGNVISIDHIEIPPRPRNWSMDEKEISWLGVDFNRIDSGISESIPVTYSPQSAKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRKVEVVRMSQEAALAIAEKEKAIAKAAMEAAEEARRRAEQEAQRRKDAEEKARAEAEEKERALSTLAQNDTRYRRYTIEEIEMATEKFSPSNKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFNQEIKILLKKHIRSGQSLDISSLAPLRILDSPDKVIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSKPIPWNKRFEISAEIATALLFLHQNKPEPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVANSVTQSYMTSAAGTFCYIDPEYQQSGILTTKSDIYSLGIMLLQIITGKPPMGLAHLVRKAVEKGRFEEVLDPVITDWPVEEALSYAKLALQCAQLSKKDRPILATEILPELNRLSRLELPPQNDQFSSSSDDNL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02118 705 Pfam Protein kinase domain 463 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02118 705 ProSiteProfiles Protein kinase domain profile. 387 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02118 705 Gene3D Transferase(Phosphotransferase) domain 1 496 700 - -
Vian4g02118 705 SMART serkin_6 387 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02118 705 Gene3D Phosphorylase Kinase; domain 1 458 495 - -
Vian4g02118 705 Coils Coil 253 273 - -
Vian4g02118 705 MobiDBLite consensus disorder prediction 149 176 - -
Vian4g02118 705 Coils Coil 313 368 - -
Vian4g02118 705 MobiDBLite consensus disorder prediction 333 361 - -
Vian4g02118 705 MobiDBLite consensus disorder prediction 154 170 - -
Vian4g02118 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Vian4g02118 705 Gene3D Phosphorylase Kinase; domain 1 356 443 - -
Vian4g02118 705 PANTHER OS02G0152300 PROTEIN 15 690 - -
Vian4g02118 705 SUPERFAMILY Protein kinase-like (PK-like) 374 689 IPR011009 -
Vian4g02118 705 FunFam Os07g0541700 protein 492 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02118 Vian-Chr4 38023473 38027095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02118 84 688 Receptor kinase-like Gene Family AT5G12000 53.058 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vian4g02118 Pkinase 8.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02118 - - gmx:100798861 940.258