Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02114 ATGGAGGAGATGTCAACCACGGTTGCAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATTACTACCCACATGGATGTGTCCAGAATTAAGCTGATGACAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACTTTTATTGCTGATGAGGATATGGACAGTAATTGTCTTGGGGAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAAGTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGATCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAGGGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCGTTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTTCTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCTCTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGACCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCACCAAGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTGGAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCAGTTGACCATAAACCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCTCAGAACGGGGAGAAGGAATTGATCCAGCTGCACAAGCAGCTGCAGAGTACCTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGATTGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA 1632 0.44 MEEMSTTVAVPLRVGNSVCDKPTITTHMDVSRIKLMTEAGLLSNSITKVSTDTFIADEDMDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEEVLTPEIEDDDLISLEGDPIIDSSLSVASENSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKIAARATDLGVSNVVADVAVSVGEETGVISVPEPTTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTKDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02114 543 SUPERFAMILY PP2C-like 225 534 IPR036457 -
Vian4g02114 543 CDD PP2Cc 231 533 IPR001932 -
Vian4g02114 543 ProSiteProfiles PPM-type phosphatase domain profile. 229 533 IPR001932 -
Vian4g02114 543 Pfam Protein phosphatase 2C 259 526 IPR001932 -
Vian4g02114 543 PANTHER PROTEIN PHOSPHATASE 177 533 IPR015655 GO:0004722|GO:0006470
Vian4g02114 543 SMART PP2C_4 219 531 IPR001932 -
Vian4g02114 543 ProSitePatterns PPM-type phosphatase domain signature. 280 288 IPR000222 GO:0043169
Vian4g02114 543 FunFam Protein phosphatase 2C 16 217 543 - -
Vian4g02114 543 Gene3D - 216 543 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02114 Vian-Chr4 37996935 38000207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02114 1 543 PP2C-type Phosphatase Gene Family AT1G17550 48.022 4.68e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02114 K14497 - gmx:102662702 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02114 4 37996935 38000207 Vian4g02114 4 37996935 38000207 ECH
Vian4g02114 4 37996935 38000207 Vian7g00506 7 12436677 12440727 ECH