Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02113 ATGGAGGATCTCGAGGAGGAAGAGAACTTAGCGGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAGAAGGTGGCGGCGGCGAAGAAGTTTATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTGTTGGAAAGAAAATTAGCATCTTCGGATGTGCCAAATGAGGAGCGGATCAATCTTATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTAATGATTTTGAACTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTCAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAGGTTGCCAGTCATTGCATTGTGAAGCTTTACTACTCATTTCAGGATGCTGAGTACTTGTACTTGATTATGGAGTATCTGCCTGGAGGGGACATTATGACACTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTATATTGCACAAAGTGTTATGGCCATAGAATCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGATTGTATTGCCTTGTCTACACTGCATGAAAATCAGACCATGGATGATGAGACATTGGCAGAGCCAATGGATGTTGATGGATGTTTGTGTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCTCGTGAACAACTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCGGACTACATTGCTCCTGAAGTACTTCTGAAAAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCACCATTTTACTCCGATGACCCAATAACCACTTGCAGAAAGATTGTTCACTGGAGAAATCATTTAAGGTTTCCTGAAGATACCCAGTTAACACTTGAGGCCAAGGATCTAATTTATAGGTTGCTGTGTGATGTTGATAATAGGTTAGGTACTCGAGGGGCCCAAGAAATAAAGGCTCATCCTTGGTTCCATGGTGTGGAGTGGGAGAAACTGTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAACGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTGGATCCACCAACAGCGGCAAGAAGTGGGTCTGGATCCTCACGGAAGATGCTAACTACCAAAGATCTAAGCTTCGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAAGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGAGTATGCTTCTAAACGGGCAGCTGAAGAAACAAGTTTACAAATGCTTGCGTCTTCTGGAGATCCCATGTTACCATAA 1524 0.435 MEDLEEEENLAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDIMTLLMREDTLSENVARFYIAQSVMAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQTMDDETLAEPMDVDGCLCDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDTQLTLEAKDLIYRLLCDVDNRLGTRGAQEIKAHPWFHGVEWEKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPTAARSGSGSSRKMLTTKDLSFVGYTYKNFDAVKEGLRQSFGDSMQEYASKRAAEETSLQMLASSGDPMLP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02113 507 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Vian4g02113 507 SMART pkinase_C_6 401 465 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian4g02113 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian4g02113 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vian4g02113 507 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Vian4g02113 507 FunFam Non-specific serine/threonine protein kinase 299 418 - -
Vian4g02113 507 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Vian4g02113 507 SMART serkin_6 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02113 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 446 - -
Vian4g02113 507 Gene3D Transferase(Phosphotransferase) domain 1 179 417 - -
Vian4g02113 507 Pfam Protein kinase domain 292 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02113 507 Pfam Protein kinase domain 94 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02113 507 FunFam Non-specific serine/threonine protein kinase 419 429 - -
Vian4g02113 507 CDD MobB_NDR_LATS-like 27 88 - -
Vian4g02113 507 Pfam Protein kinase C terminal domain 419 463 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vian4g02113 507 ProSiteProfiles Protein kinase domain profile. 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02113 507 CDD STKc_NDR_like 91 464 - -
Vian4g02113 507 SUPERFAMILY Protein kinase-like (PK-like) 76 450 IPR011009 -
Vian4g02113 507 FunFam Non-specific serine/threonine protein kinase 177 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02113 Vian-Chr4 37972801 37989077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02113 1 506 AGC Kinase Gene Family AT4G33080 80.000 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vian4g02113 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02113 K08790 - gmx:100815717 983.786