Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02104 ATGAGTTTGGGCACCGCCGAGGACGATTCGGGTTCTGAAATCCACATCCCCGCGGAGATTGACTGGCACATGTTGGATAAGTCCAAGTTTTTCTTCCTGGGTGCCGCCTTATTCTCCGGTGTTTCCTTCACGCTCTACCCCATGGTCGTGTTGAAGACGCGCCAGCAGGTTTCCTCCTCACGCTTCTCCTGCCTCAACATGTCCTGCGCCATTATGCGCTGCGAGGGTCTCAGAGGTTTTTACAAAGGCTTCGGCACTTCCCTCATGGGAACCATCCCCGCGCGTGCGCTCTACATGGGGTCGCTTGAAGTCACTAAAAGTAACGTCGGGACAGCTTTTCTCGAATTGGGGTTCTCTGAGACGACGGCTGTGGCGGTGGCTAATGCCACGGCGGGTGTTACTTCCGCCATGGCGGCGCAGCTGGTGTGGACCCCGGTTGATGTCGTGAGTCAACGGCTCATGGTTCAGGGGAGTGGAGGGAGTAAAACCATTCTGGCCAATCTTAATTCCGAGAGTTACAGGAACGGGTTTGACGCGTTCAGGAAGATTCTGTGTGCTGATGGAGCAAGAGGGTTCTACAGAGGGTTTGGGATTTCGATATTGACTTATGCTCCTTCCAATGCGTTTTGGTGGACTTCTTATTCCATGGTTCACAGACTCATCTGGAGTGCTTTTGGTTCTTACTTGAGTAAGGGTAAAAGTGAAAGCAACGATAATTTGAGTGGTGTTAGGCCTAATTCTAAGACAATGGTGGCGGTTCAAGGGCTGAGTGCGGTTATGGCCAGTGGGGTCTCTGCAATTGTGACAATGCCTCTGGATACCATCAAGACAAGGTTGCAGGTGTTGGATAACGAAGAGCATGGGAGAAGGAGACCATTAACTTTTGTTCAGACGGTGAGGAATTTGGTAAAGGAAGGTGGATTGCCCGCTTGTTACAGAGGATTGGGACCAAGATGGGCTTCCATGTCATTGTCTGCTACAACTATGATTACTACCTACGAGTTTTTGAAAAGAATGTCTACCAAGAGTCAATAG 1035 0.5053 MSLGTAEDDSGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSFTLYPMVVLKTRQQVSSSRFSCLNMSCAIMRCEGLRGFYKGFGTSLMGTIPARALYMGSLEVTKSNVGTAFLELGFSETTAVAVANATAGVTSAMAAQLVWTPVDVVSQRLMVQGSGGSKTILANLNSESYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAFWWTSYSMVHRLIWSAFGSYLSKGKSESNDNLSGVRPNSKTMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDNEEHGRRRPLTFVQTVRNLVKEGGLPACYRGLGPRWASMSLSATTMITTYEFLKRMSTKSQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02104 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vian4g02104 344 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Vian4g02104 344 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Vian4g02104 344 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Vian4g02104 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Vian4g02104 344 Gene3D Mitochondrial carrier domain 28 344 IPR023395 -
Vian4g02104 344 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 343 - -
Vian4g02104 344 Pfam Mitochondrial carrier protein 36 108 IPR018108 -
Vian4g02104 344 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Vian4g02104 344 Pfam Mitochondrial carrier protein 251 343 IPR018108 -
Vian4g02104 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02104 Vian-Chr4 37873813 37874847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02104 1 344 Chloroplast and Mitochondria Gene Families AT1G72820 65.994 1.53e-161 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02104 K15121 - gmx:100784202 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02104 4 37873813 37874847 Vian4g02104 4 37873813 37874847 ECH
Vian4g02104 4 37873813 37874847 Vian7g00548 7 13061279 13062674 ECH