Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02103 ATGGACGCAGCCGGAGGACCTCCCTACAATCCCCGTTCCGTCAACGAGGTCTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGAGGTTGAATTGTTCTACCAGCAGTGTGATCCAGATAAGGAAAATCTTTGCCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCCGTTCACAGTGATACATGGTTAATTTCTGTGGCTATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAGTCTTTTTAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTGCTGGGAAGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTCTCTAATCATGACAATAACAAATCTAAATCAAACAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAACCAAAGAATGAGGGTGCTTTGGAAAAGGATGATGAGCATGGAGAGGAACTATGTGGGGCATGTGGAGAGAACTATGGTAATGATGCTGACGAGTTCTGGATTGGCTGTGACATTTGTGAGAAGTGGTTTCATGGGAGATGTGTGAGGATTACCCCTGCGAAGGCTCAGAATATCAAGGAGTACAAATGTCCATCTTGCAGCAACAAGAGAGTTCGTCAATAG 759 0.444 MDAAGGPPYNPRSVNEVFRDFKGRRAAIVKALTTEVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDTWLISVAMYFGARFGFDKADRKSLFSMINDLPTIFEVVAGKAKKQGKEKSSVSNHDNNKSKSNKRGSESQEKYSKSMEPKNEGALEKDDEHGEELCGACGENYGNDADEFWIGCDICEKWFHGRCVRITPAKAQNIKEYKCPSCSNKRVRQ 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02103 252 CDD PHD_AL_plant 196 248 IPR044104 -
Vian4g02103 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 247 IPR013083 -
Vian4g02103 252 MobiDBLite consensus disorder prediction 146 188 - -
Vian4g02103 252 FunFam PHD finger alfin-like protein 189 247 - -
Vian4g02103 252 SMART PHD_3 196 246 IPR001965 -
Vian4g02103 252 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Vian4g02103 252 ProSiteProfiles Zinc finger PHD-type profile. 194 248 IPR019787 -
Vian4g02103 252 PANTHER CPG BINDING PROTEIN 10 252 IPR045104 GO:0006355|GO:0042393
Vian4g02103 252 Pfam PHD-finger 197 248 IPR019787 -
Vian4g02103 252 ProSitePatterns Zinc finger PHD-type signature. 197 245 IPR019786 -
Vian4g02103 252 SUPERFAMILY FYVE/PHD zinc finger 189 249 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02103 Vian-Chr4 37862961 37865712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02103 4 251 Alfin-like Transcription Factor Family AT3G42790 68.924 1.07e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vian4g02103 Alfin 2.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02103 K26274 - vvi:100247536 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02103 4 37862961 37865712 Vian4g02103 4 37862961 37865712 ECH