Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02102 ATGATTGGTGGCATGGCGTCGTTCAACCCGGCGATAACGGTGGAGAGGTCGTCGTTAGCAAGAAGCGGGTTGGTGGGGGACCGGGAACCCTCTTTGGCCTGTGGGCCAAAGAATGAAGGCTTGGATCCTGTGGATGGTAGAGCCTGTCGTGCACCTCAAACTTGGAGAGGACGACAATGGTGGAGCCGGAGGCCAGGAGGAAGGCTGCGGGCGTTAGGTGGGATAGATGGCACCATAGTTGTGCCTTCGTCGCCAGGAAATGCCTCACCAACGAATCGTGTCGGTGGCGGCGCTGTCTTTGGCGTCGCCGCTGCAGACATTTCCATTTTCCTCACCGTGATTAAGTGTTTTTCTGCCTCCAATGTATCCATGGATAACGATTGGGATAACTCCTCCCACTCATTTCACAATCCACTCATCTGTAACTATATCGAACCAGATCCCGCACTCGTCTATACAGTCAATGACCACCCCGACGTCGAGCCCCAACAACCAAATGTTCCTGTTCTTGTTGAACATGGCAATCATCTTACCGTAGGAGGAGGAGTACCTAACTTGGAAAAGGGGAATTGGTCGACGAGGAAGCCTAAAATTCCTTTCATGGATCCAATGATTGAATATCATCCCGTGCATGGCGATAATACGTTTCCCAACGGAGAAAATACGAGTGCAGATGTAAATTTAAACGACCTTCGATTTTGTCGTCCTGTACCAAAGCCAATGTTCTGCACTTGCTGTCAAGTTCTTAGACAATTGATTTACACCAACGGTTCTGATTGTGATGAAACATTTGAGATTCATGGAGAGATCGGGGTGATTAGCCACGCAATAGTCCACTGTCAGAATTTCACACCGGATGGCCTTTCAGGCGACTCTTATCGCAGGATTGAGTACGTTCTAAAACTTTTGCATGGAGATGTTACATTAAACAAAGCTTCATCGTCATTTTATGTTTTAGTGTATATTCAACCCTTGTCTGCATTTGGGTGTATCAGTTTCTCCCACAATAGCACAGCAGAAATTAAGAGTTACCTGGTAGAATACTGCACACAGAAGAATAAATTAGGATACATTGCTCTAGAAGATCCGTTGTCTACTTATTATGAAGCCCTCTGCACTGGTCTGGAAACGGTTGGCGAGCCTGAGTTGGAGGCCGAGAGTAAAAGGGCTTCTTCAGCTGTTAAACCCAACCGCCAATTTCAGATAAAGAGAATAAAAAAGATGACATTGAATGATCTGAGAGGTGTGTTCCATTTAACGATTAAGGATGCTGCTGCAGAAATAGGCGTATCGGTATCTGTGATAAAGGGTATTTGCCGCAGGGAAAGAATATCTTACTGGCCACAAAGGAAGGTGACAAGCTTGGCGAAGAGAGTGGAAGTACTGAAGAAAAGTTTGGATTCAGCGGATCCAGTGGAATACAGCTGCTTCAATTCCAAGAACAATAGTGTCTTCAATTGCAATGGAGAAGAAGCTATTATGACTGAGTCTCTTCGGTACATGGAGGCAGCCGTAGGAGCTCCGTCGAATCACCCTTCCGTCCAAGAAGTCTTCCTAGATTTCAAGGGCCGCAGAGCTGCCATTGTTAAGGCCCTCACCATTGATTACGAAGACTTCTTTCAGCAATGTGATCCAGGGAAGGATGATCTTTGTCTTTATGGATTTCCTAATGAAGTCTGGCAAGTCGATCTACCTGCTGAGGAGGTGCCTGCAGAGATCCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGATGGGATGGAAGAACGGGACTGGGTATGCTTTGTTGCTGCGCACAGTGATACATGGTTAATAGCTGTGGCTATGTTTTTTGGAGCAAGATTTGGGTTTGATAAGGCTGATAGGGATAATCTTTTTAATATGATAAATGATCTTCCAACAGTATTCGAGGCTGTTGTTGGGAAGGTCAAGAAACAAGGAAAGAAAAAGTCACCAGTTTCTAATCATAACAACAAATCTAAATCAAACTTCAAGACTGTTGTAGTGTCGTCCCTTGGTGATGTTTTGCTTGGTTTTTCAGATGCTAACTTTTGA 2055 0.454 MIGGMASFNPAITVERSSLARSGLVGDREPSLACGPKNEGLDPVDGRACRAPQTWRGRQWWSRRPGGRLRALGGIDGTIVVPSSPGNASPTNRVGGGAVFGVAAADISIFLTVIKCFSASNVSMDNDWDNSSHSFHNPLICNYIEPDPALVYTVNDHPDVEPQQPNVPVLVEHGNHLTVGGGVPNLEKGNWSTRKPKIPFMDPMIEYHPVHGDNTFPNGENTSADVNLNDLRFCRPVPKPMFCTCCQVLRQLIYTNGSDCDETFEIHGEIGVISHAIVHCQNFTPDGLSGDSYRRIEYVLKLLHGDVTLNKASSSFYVLVYIQPLSAFGCISFSHNSTAEIKSYLVEYCTQKNKLGYIALEDPLSTYYEALCTGLETVGEPELEAESKRASSAVKPNRQFQIKRIKKMTLNDLRGVFHLTIKDAAAEIGVSVSVIKGICRRERISYWPQRKVTSLAKRVEVLKKSLDSADPVEYSCFNSKNNSVFNCNGEEAIMTESLRYMEAAVGAPSNHPSVQEVFLDFKGRRAAIVKALTIDYEDFFQQCDPGKDDLCLYGFPNEVWQVDLPAEEVPAEIPEPVLGINFARDGMEERDWVCFVAAHSDTWLIAVAMFFGARFGFDKADRDNLFNMINDLPTVFEAVVGKVKKQGKKKSPVSNHNNKSKSNFKTVVVSSLGDVLLGFSDANF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02102 684 ProSiteProfiles RWP-RK domain profile. 389 475 IPR003035 -
Vian4g02102 684 Pfam Alfin 514 640 IPR021998 GO:0006355|GO:0042393
Vian4g02102 684 Pfam RWP-RK domain 407 455 IPR003035 -
Vian4g02102 684 PANTHER CPG BINDING PROTEIN 511 665 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02102 Vian-Chr4 37846408 37857345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02102 513 667 Alfin-like Transcription Factor Family AT5G20510 66.026 1.87e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian4g02102 Alfin 3.8e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02102 K26274 - vun:114163720 493.812