Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02100 ATGGATAATAATTGTAATAACTACTCCGACTCATTTCACAGTCCACTTATCGGTAACTACATCGAACCAGACCCTGCACTTATCTATATATTAAACGACCAACCCAATGTACAGCAACGAAATGCACAACAAAATGATCCTTTTGTCGTTGAACAGGATCATGTTTCCTTCACTGGTCTAACGATTCAAGATGTATCCACGCATAGCGATAATGATTTCACCATAGGAGGAGTTCCTAATTTGGAAAACGGGGGTTGGTCGACGAGGAAGCGTAAATTTCCCTACATGGATTCAATGATTGAAGGTCATCCCGTGCATGGCGATAATACTTTTCCCAACGAACTTCAATTTTGGCCTCCTGGGCCGTTTGATATTGATATTGATGCCTCATTTGATCCATTTCTTCATAATTTGATCGACCGGGACATCTCAATTTTCGATCTATCCAATGATGAACTCATTGCACCCTCTTCTCAACAAAATGCATTGCCCCAGCACCAACACGCTGTGCCAGGGCAACAAAATGCACTTTGCAAACAGCCAAATGCGCCGCCTCAGAACCAAAATTTGTATCCCTTTGGCCTTGAACAGATTCATGTACCCATCTTGAATCCAACGTTCCAAGATCAATCCTTGCATGTCAATTATAATTTTGCAACTGGAGAAGTTCCTAACATTGACATGGAGGGTCCATCAAGGAGGAAGGTTAAACAACCCATGGCTGAACATCCATTATTAAAGCATGGTATACTGAACGAGGAAGATGTGGTAGCACTTGACCATTGGCCCCCGTCACCAAAGTCAATGTCTTGCTCTTGCTGTCAAATTCTTAGACAAATAATTCATACAGATGGTTTTAAGTTCGAAAAGTTAGAGATTCATGGATCGCTTGGGGTGATTGGCCATGCGATATTCCACGTTCAGGATATGACACCGGGTGGTGAACCTCCAAGAGAAGTTTATCAAATGATAAAGCAAGTTCTAACTTCCATATGTGTTGCTTTGTTTCGGCCTCAAAAGCATAGAACAAATAAGGAGTTTCCTGGTAGCATACTGCAAGGACCAGACAAGATTAGGGCTTCAACTGCTAGGCCTAAGCCTAAACGTAATATGGCAGTTCAGAGAAAGAGAGTACCAAAGATGACAATGAATGATTTGAGCCCTTTCTTCCATTTAACTATTAGGGATGCTGCAGATAAATTGGAGGTAAGCGACTCTGTGGTGAAGAAAATCAGTCGCTTGGGAAACTTAAAAAGATGGCCACAAAGAAAGCTGCAAAGCCTTGCGAAGGATGTGAGAGTGTTGAGAAAAGCATTGGATTCGCCCTATGAAGGGACAAGGCAGAGAGTTCGACAAGAAATTCAACGACTCCAACTAGAAATGGTAGCGATCTGTGGTGGAGTTACCCCAACCGGAATAGAAATTATCCAATTCGAAGAAGAATAG 1446 0.4219 MDNNCNNYSDSFHSPLIGNYIEPDPALIYILNDQPNVQQRNAQQNDPFVVEQDHVSFTGLTIQDVSTHSDNDFTIGGVPNLENGGWSTRKRKFPYMDSMIEGHPVHGDNTFPNELQFWPPGPFDIDIDASFDPFLHNLIDRDISIFDLSNDELIAPSSQQNALPQHQHAVPGQQNALCKQPNAPPQNQNLYPFGLEQIHVPILNPTFQDQSLHVNYNFATGEVPNIDMEGPSRRKVKQPMAEHPLLKHGILNEEDVVALDHWPPSPKSMSCSCCQILRQIIHTDGFKFEKLEIHGSLGVIGHAIFHVQDMTPGGEPPREVYQMIKQVLTSICVALFRPQKHRTNKEFPGSILQGPDKIRASTARPKPKRNMAVQRKRVPKMTMNDLSPFFHLTIRDAADKLEVSDSVVKKISRLGNLKRWPQRKLQSLAKDVRVLRKALDSPYEGTRQRVRQEIQRLQLEMVAICGGVTPTGIEIIQFEEE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02100 481 Pfam RWP-RK domain 380 428 IPR003035 -
Vian4g02100 481 PANTHER PROTEIN RKD4 260 466 IPR044607 GO:0003700
Vian4g02100 481 MobiDBLite consensus disorder prediction 345 374 - -
Vian4g02100 481 ProSiteProfiles RWP-RK domain profile. 368 449 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02100 Vian-Chr4 37837726 37839863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02100 346 441 NLP Transcription Factor Family AT3G59580 30.208 7.99e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian4g02100 RWP-RK 3.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02100 - - pvu:PHAVU_009G080800g 509.99