Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02097 ATGGATGCTAATTTTAAGAAGCAAGGTCTTCAAGGCGGCGATGTGAGCTTGGCTGAGAAGAAAAGGGAAGTTATGGTGGCGATTCCAAATGAGGGTGGTGGTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGGGAATTCGCCCCACAGAATGTTAAACGACGAGTTTTCTGTAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGATTCCCGTTTCCAGCGCCAATCTCACCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTACCCTGTTGATGGGACTCTTTTAGAAGAGAATGGTACCTCAACTTTGCAAGAAAATTTGGGTGTTGGTTCACCATATAAAGCATCGCCTATTAACAATAAACCTGGAACTATTAGTCGAACAGTCTCCATCCTTTCTGTGATCACTCCTAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCTGGTGGGGAGGATTTCGATGAACTCATTTACAGAAAAGTTGAATTGAGTAAAAGCAAACGTAGTAGAAGAGTGACAGTTAAGGTTTTGTCTGAATGGTTTGTGTTCGTGTGCATTACAAGTACCTTGGTGGCTAGTTTAACAGTTGGAAAACTTAAAAGAACGGAGATTTGGGGTTTGGGGATTTGGAGATGGTGTGTGCTTGTGATGGTGACCTTTTGCGGAATGTTGGTCACCAGATGGTTCATGCGCATTATTGTTTTCTTGATTGAGACGAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGGGGGGTGGACCGATCTGAATTGGCCACAAAGATTTTGAATGGGGTAACATGGACTCTTGCTTCCCTCCTCATTGGTGCATTCCTGTGGTTCATGAAGACATTGTTGCTCAAGATTTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAAGAAACGCTTTTCCACCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGATTGGGAAATCAATCAGTGTTGGTCACTTTAGTTTCAGGAGTACAGATGGTAAGGGTGGAATGAAGAAAGAAACCATTGATATTGCGAAGCTTCACCATATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTCTTGGTAGATGCAATGACAAATTCAAGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTTGATGATGGAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCACATTTTCAGGAATGTTGCTCCCCCCGGTTGCACGTACATTGACGAGGAAGAACTAAGAAGGTTCATGATTAAGGAAGAAGTGAGGATGGTATATCCCCTACTGGCTGAAGCAGAAACAGGGCAGATTACCAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGAGACAACTAAACAAGCTCGTGACAGTAATCCTAGTAGTTGTGACCGTAATTGTGTGGCTTCTACTAATGGAGATTGCAACAACGAAAGTACTTGTGTTTCTATCTTCCCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACTTGTAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTTGATGGGGTTGAGCTATTGGTTGAAGAAATGAACATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAAGTGTACTATCCAAATTCTGTCTTGGCTATGAAACCGATTAGCAACTATTACAGAAGCCCAGATATGGGTGACCGTGTAGAGTTCTCCATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAGAGAAAGAGTAAAGAGGTACCTGGAGAGAAACCCACAGTACTGGCACCCTAATCATGGGTTAGTAGTGAAGGAGATCGAAGACGTAAACAAAATTAAGATGGGTATATACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAGATTTTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGCCATTCATCTCAGACATATGGAGCCAGACCCTAGGGTTACATGA 2313 0.428 MDANFKKQGLQGGDVSLAEKKREVMVAIPNEGGGESLMPKQQSRGNSPHRMLNDEFSVKSPPLNCASPEIRFMPSPNKPPKIPVSSANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGTSTLQENLGVGSPYKASPINNKPGTISRTVSILSVITPKTPLMASPGPAGGEDFDELIYRKVELSKSKRSRRVTVKVLSEWFVFVCITSTLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIIVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVDRSELATKILNGVTWTLASLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQETLFHQYILQTLSGPPLVEEAEKIGKSISVGHFSFRSTDGKGGMKKETIDIAKLHHMKQEKVSAWTMKVLVDAMTNSRLSTISSALDESFDDGENEQTDKEITNEMEATAAAYHIFRNVAPPGCTYIDEEELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVRQLNKLVTVILVVVTVIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALRERVKRYLERNPQYWHPNHGLVVKEIEDVNKIKMGIYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQAIHLRHMEPDPRVT 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02097 770 MobiDBLite consensus disorder prediction 29 60 - -
Vian4g02097 770 Pfam Mechanosensitive ion channel 544 750 IPR006685 GO:0016020|GO:0055085
Vian4g02097 770 PIRSF Memb_At2g17000 18 769 IPR016688 -
Vian4g02097 770 Gene3D - 604 653 IPR023408 -
Vian4g02097 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 82 765 IPR016688 -
Vian4g02097 770 FunFam Predicted mechanosensitive ion channel 604 653 - -
Vian4g02097 770 MobiDBLite consensus disorder prediction 94 114 - -
Vian4g02097 770 MobiDBLite consensus disorder prediction 36 50 - -
Vian4g02097 770 SUPERFAMILY Sm-like ribonucleoproteins 594 653 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02097 Vian-Chr4 37810450 37813476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02097 23 760 Mechanosensitive Ion Channel Family AT5G12080 58.356 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02097 K22048 - gmx:100803107 1330.47