Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02087 ATGGCTACTCGTCTCTTCAGATTTCCTCTCACCTCGCAACCCAAGCTCTGCTTCAATTACACGCCCAACCATCCTGTCCAATTCATATCTCCGACCAAACGACGTCGCAACCGCCACCGCCATGAGATTCTCCGTCCATCATTCGCAGTATCCAGCTCCTTCCGGACCGAGATTGGCTCACCTGAATCAGTTCTTATCGGAGTCCAGAGAGAGAAAAAAGACTCGCCGGTTCTGCTTGACGTCACCGGCATGATGTGCGGTGCGTGCGTCTCCCGAGTCAAAAACATCCTGTCCGCTGACGAACGAGTTGACTCTGTCGTGGTCAACATGCTGACCGAGACTGCCGCCGTTAATCTGCGCCGGACCGAGGAGGAACCGGCGAGCGTCGCCGAGAGCCTCGCACGGAGACTGAGCGACTGCGGATTTCCGACGAAGCGGAGAGCGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAATTGGTCGCCAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGGTCGCACGCTTCGCATATCTTTCACTCTCTGGGGATCCACATTGCTCATGGATCGCTTTGGGAGATTCTTCATAGTTCGTACGTGAAGGGTGGTTTAGCTTTGGGGGCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAATGCGTTTAAGAAGGGATCGCCTAACATGAACTCTCTCGTGGGATTTGGTTCTATAGCCGCATTCATCATTAGTTCCATCCCGCTACTTAACCCCAGCCTAGCATGGGATGCATCCTTCTTTGATGAACCGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGTTCCAACACTGTGATATCGAAGATTGTACGCATGGTTAGTATCTCATCTTCTGTAATGGCTTGCATTGTTGATAAGTCCATTGATTTGAGATATGAGGAAATCAAACAATTGTATTTTTTTGGATCACAGATATTTCCTGATGTGTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTATCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCTACGCCCACGGCAATCCTGGTTGGCACCTCACTTGGAGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTAGAATAAACTATATTGCTCTAGACAAGACAGGAACCCTGACGAAAGGAAAACCAGTTGTGTCGGCCATAGGCTCTATCCATTATGGAGAGTCTGAAATTCTTCGGATTGCTGCTGCAGTGGAGAAGACTGCATCTCACCCAATAGCAAAGGCTATTATCAATAAAGCTGAGTCATTGGAGTTGATCCTTCCTGTCACAAAGAGACAGTTAGTAGAACCAGGTTTTGGTACATTAGCAGAAGTAGATGGGCATTTGATTGCAGTTGGATCTTTGGAATGGGTTCATGAACGCTTCCAAACAAAAGTAAATCCGTCCGATCTAACAAATCTGGAACATAGTTTGATGAATCATTCATCAAATACAGCATCTTCTAAGTATTCGAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATAGCTGACACTGTGCGTGAAGATGCTGAATCTACTGTGATGAGGCTCAAGCAGAAGGGGATTAAAACGGTACTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTAGGTTTATTTCCTCTCTAAAAGCTGCCGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATTATACTTCTAGGGAACAAAATTTCACAAGTTGTCGATGCGCTCGACCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCGGTCGCCTATAATGTTGTTGCCATTCCCATTGCTGCCGGTGTATTACTTCCCCAATTTGACTTCGCTATGACACCGTCACTTTCAGGAGGACTGATGGCCCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTGCAGCTTCATGGGTCTCCGATCCCTAGAAAGGGCTAA 2247 0.4753 MATRLFRFPLTSQPKLCFNYTPNHPVQFISPTKRRRNRHRHEILRPSFAVSSSFRTEIGSPESVLIGVQREKKDSPVLLDVTGMMCGACVSRVKNILSADERVDSVVVNMLTETAAVNLRRTEEEPASVAESLARRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVAKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGSLWEILHSSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSIPLLNPSLAWDASFFDEPDGPLRIEASSTGSNTVISKIVRMVSISSSVMACIVDKSIDLRYEEIKQLYFFGSQIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLARINYIALDKTGTLTKGKPVVSAIGSIHYGESEILRIAAAVEKTASHPIAKAIINKAESLELILPVTKRQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTKVNPSDLTNLEHSLMNHSSNTASSKYSKTVVYVGREGEGIIGAIAIADTVREDAESTVMRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSRFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSPIPRKG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02087 748 PRINTS P-type cation-transporting ATPase superfamily signature 549 560 - -
Vian4g02087 748 PRINTS P-type cation-transporting ATPase superfamily signature 571 581 - -
Vian4g02087 748 PRINTS P-type cation-transporting ATPase superfamily signature 626 645 - -
Vian4g02087 748 PRINTS P-type cation-transporting ATPase superfamily signature 413 427 - -
Vian4g02087 748 PANTHER ATP7, ISOFORM B 72 283 - -
Vian4g02087 748 FunFam Copper-transporting ATPase PAA2, chloroplastic 424 557 - -
Vian4g02087 748 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 415 504 IPR023299 GO:0000166
Vian4g02087 748 SUPERFAMILY HMA, heavy metal-associated domain 77 134 IPR036163 GO:0046872
Vian4g02087 748 NCBIfam heavy metal translocating P-type ATPase 284 737 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian4g02087 748 SFLD p-type atpase 396 679 IPR044492 -
Vian4g02087 748 SUPERFAMILY HAD-like 411 734 IPR036412 -
Vian4g02087 748 Pfam Heavy-metal-associated domain 79 142 IPR006121 GO:0046872
Vian4g02087 748 Gene3D - 68 148 - -
Vian4g02087 748 ProSiteProfiles Heavy-metal-associated domain profile. 75 145 IPR006121 GO:0046872
Vian4g02087 748 ProSitePatterns E1-E2 ATPases phosphorylation site. 415 421 IPR018303 -
Vian4g02087 748 CDD HMA 79 143 IPR006121 GO:0046872
Vian4g02087 748 SFLD C1.7: P-type atpase like 396 679 - -
Vian4g02087 748 Pfam E1-E2 ATPase 284 393 - -
Vian4g02087 748 FunFam Copper-transporting ATPase PAA2 chloroplastic 74 147 - -
Vian4g02087 748 Pfam haloacid dehalogenase-like hydrolase 409 640 - -
Vian4g02087 748 Gene3D - 404 677 IPR023214 -
Vian4g02087 748 NCBIfam HAD-IC family P-type ATPase 359 718 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian4g02087 748 Gene3D - 424 557 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02087 Vian-Chr4 37729805 37737981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02087 284 743 Primary Pumps ATPases AT1G63440 36.478 5.30e-72 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02087 K17686 - gmx:100127402 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02087 4 37729805 37737981 Vian4g02087 4 37729805 37737981 ECH