Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02086 ATGGATATTGACCTTTCAAATAATAAACTCTCTGGCTTGATCCCTGAAGAACTTAGTCAGCTTCAGAACATGATATATTTGAGACTAGAAATGAACAAATTATCAGGGGATTTGTCTTCGCTTGTAAATTGCCTTAGTCTTTCTTTGATTAATGTATCTTACAACAATTTAGTTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCTCCTGATAGTTTCATTGGAAACCCTGGTCTCTGTGGCTATTGGCTGGATTCATCTTGTCAAGGGTCTCACCCTACCGAACGAGTTAACCTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGTGCCCTCGTGATTCTTTTCATGGTGCTCTTTGCAGCTTGCCGACAACACAATCCAGCTCCTTTCCCTGAAGGATCTTTTGACAAACCAGTTAATTACTCACCTCCGAAGCTAGTGATACTTCACATGAATATGGCACTTCATGTATATGATGATATAATGAGAATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTACAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTCTATTCCCACTACCCCCAATGCTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCTCTGTCTCCATTTGGAAACCTCCTCTTTTATGATTACATGGAAAATGGAAGTCTGTGGGATCTTTTACATGGACCTACCAAGAAGAAAAAACTTGATTGGGATGTTCGTCTAAAAATAGCACTTGGATCAGCACAAGGGCTCGCTTATCTACACCATGATTGCTGTCCACGTATCATTCACAGGGATGTAAAATCATCTAATATATTACTAGACAAAGACTTGGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGCCCTTCTAAGTCCCACACTTCCACTTACATAATGGGCACCATTGGCTACATAGACCCCGAGTATGCTAGAACTTCTCGTCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTTGAGCTTCTAACTGGGAGGAAAGCTGTGGAAAACGAATCAAACCTTCATCATCTGATTTTATCCAAGACAGCTAATGATGCTGTAATGGAAACCGTTGACCCAGATATCAGTACCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCCCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACCCGCGTTCTGGGGAGTCTAGTGCCACCAAAAGAATCAGTTCCAATGCAAGTACTTTTACCTCATTCACAGCCATCTGCGAAAATGCAATCCTACAAGGATGAATACGCCAATCTTAAAGCTCCACACCTGGTCAACTGTCCCTCCATCAGCACCTCTGATGCGCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGAGTGA 1512 0.4213 MDIDLSNNKLSGLIPEELSQLQNMIYLRLEMNKLSGDLSSLVNCLSLSLINVSYNNLVGVIPTSNNFSRFSPDSFIGNPGLCGYWLDSSCQGSHPTERVNLSKAAILGIALGALVILFMVLFAACRQHNPAPFPEGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLFYDYMENGSLWDLLHGPTKKKKLDWDVRLKIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKDLEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENESNLHHLILSKTANDAVMETVDPDISTTCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKESVPMQVLLPHSQPSAKMQSYKDEYANLKAPHLVNCPSISTSDAQLFLKFGEVISQNSE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02086 503 Gene3D Phosphorylase Kinase; domain 1 144 246 - -
Vian4g02086 503 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 437 - -
Vian4g02086 503 FunFam Leucine-rich repeat receptor-like protein kinase 1 92 - -
Vian4g02086 503 Gene3D Transferase(Phosphotransferase) domain 1 247 448 - -
Vian4g02086 503 SMART serkin_6 171 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02086 503 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Vian4g02086 503 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 247 447 - -
Vian4g02086 503 Pfam Protein kinase domain 174 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02086 503 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 142 246 - -
Vian4g02086 503 Gene3D Ribonuclease Inhibitor 1 98 IPR032675 -
Vian4g02086 503 SUPERFAMILY Protein kinase-like (PK-like) 148 437 IPR011009 -
Vian4g02086 503 ProSiteProfiles Protein kinase domain profile. 171 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g02086 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vian4g02086 503 SUPERFAMILY L domain-like 3 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02086 Vian-Chr4 37710911 37714580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02086 3 502 Receptor kinase-like Gene Family AT5G62230 59.681 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vian4g02086 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02086 K20718 - gmx:100795363 898.656