Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02080 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTGTTGATCTTAAACTGTTACAAGACTCAAAGTTCCTTACAGGAATCAGAGAAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTCTCGGATATAAGCATTCCTAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCCTTGTTGGCCCAAAGCTTTACACATTCACCCTAGAGGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGTAATCTTCTGGGTGAAGGAGGGTTCGGACCTGTGTACAAAGGTTTTGTTGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGTCTGTAGCAGTGAAACAACTGAACTTGGATGGCTTCCAAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTGGTTTTGTTGGAATTGCTTACAGGAAGAAGGGTAGTGGATAAGTGCCGACCCAATAGAGAACGAACCCTTGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGAAAGTTGCACCATATAATAGACCCTAGATTAGAAGGGCAGTTTCCTAGGAAAGGAGCTTTGAAGGTTGCTGCATTGACCTATAAATGTTTGAGCCACCACCCCTATCCAAGGCCAGCTATGAGTGATGTGGTTAAGATACTAGAGTCTCTTCAGGATTTTGACGATGTGATCATAGGACCATTTGTGTATGTTGCAGTGACTGAAAGTAGCCAATGA 735 0.4299 MSSKKITWKSIVLILNCYKTQSSLQESEKQVLKQGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLEELREATHNFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQSVAVKQLNLDGFQGHLSTKSDVYSYGVVLLELLTGRRVVDKCRPNRERTLVEWARPLLRDQRKLHHIIDPRLEGQFPRKGALKVAALTYKCLSHHPYPRPAMSDVVKILESLQDFDDVIIGPFVYVAVTESSQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02080 244 Gene3D Transferase(Phosphotransferase) domain 1 110 230 - -
Vian4g02080 244 SUPERFAMILY Protein kinase-like (PK-like) 125 231 IPR011009 -
Vian4g02080 244 SUPERFAMILY Protein kinase-like (PK-like) 57 122 IPR011009 -
Vian4g02080 244 PANTHER OS01G0588500 PROTEIN-RELATED 34 126 - -
Vian4g02080 244 Pfam Protein tyrosine and serine/threonine kinase 124 220 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02080 Vian-Chr4 37656981 37658819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02080 80 224 Receptor kinase-like Gene Family AT4G02010 38.158 8.53e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian4g02080 PK_Tyr_Ser-Thr 4.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02080 - - gmx:100805771 228.794