Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02079 ATGATGCACATGACCTTTTACTGGAGCCGGAAGGTCAATCTCCTGATCGATTCCTGGCAGACCCACGATTGGACCGATTATCTTCTCACCCTTCTTGCATGCCTCATCGTTTCCGCTTTCTACCAGTTCATTGAGAATCGTAGAATTCGCCTCAAGCTCATCGGCGCCGGAAAACCCTTCCCGTCTGAGATCCAGACCCCTCTGTTACAGCGGAAGCTCACCGGAAACGGGGCCAAATTGGGTGTGAAGGTCGCCGGGGCGATTCTCTTTGGGCTGAGCTCGGCCATAGGGTATTTGTTGATGTTATCGGTTATGTCCTTCAACGGAGGGGTCTTTGTGGCCATCGTCTTGGGTCTCGCTGTTGGTTACTTTTTCTTCAGGAACGAGGGTGAAGATTCCATTACAGTAGACACTTCTTGCGCCTGTGCTTAA 432 0.5139 MMHMTFYWSRKVNLLIDSWQTHDWTDYLLTLLACLIVSAFYQFIENRRIRLKLIGAGKPFPSEIQTPLLQRKLTGNGAKLGVKVAGAILFGLSSAIGYLLMLSVMSFNGGVFVAIVLGLAVGYFFFRNEGEDSITVDTSCACA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02079 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 133 IPR007274 GO:0005375|GO:0016020|GO:0035434
Vian4g02079 143 Pfam Ctr copper transporter family 4 126 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02079 Vian-Chr4 37655293 37655724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02079 1 143 Inorganic Solute Cotransporters AT5G20650 48.344 5.09e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02079 K14686 - gmx:100805457 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02079 4 37655293 37655724 Vian9g00377 9 3605605 3606087 ECH
Vian4g02079 4 37655293 37655724 Vian4g02079 4 37655293 37655724 ECH