Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02073 ATGGCGGATGTCATGGTAATGAAGGAGATCGAAGACACAGCACTGCGTCTGGACGTGGATCTCTCCACTCTTGATCTCGACTCCATTCGTCTTCCTCCCGGTGAAACTTGTGGAATTGTCAGTGATGACGAGGAAGTTTACCAGGAAGATAATCTCGAGTTCGAGTCGGGATTTGGTAACATCATTGTCGTCGACAACCTCCCTGTCGTTCCGAAGGAGAAGTTTGAAAAGCTTGAAGGAGTGGTTCGTAAAATTTATAGTCAGATTGGTGTTATCAAAGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACTGATAAAACCCTAGGGTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCTAAAGAGAAGACTCACGGATACAAATTGGATCGTGCACATATTTTTTGCGTGAGCATGTTTGATGATTTCGATAAGTTTATGAAGGTGCCCAACGAATGGGCTCCGCCGGAAACTAAGCCGTATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGTGCTTTTTGGACCGAAAGTTTTGTCCAATGGTCTCCTCTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTATGGGGGGGTTCTTCAAGCTTTAACAGGCTTATGAGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAAAAGTATCTGGTAACTTACAGTAGCCATGAACCAAGCAATCCTCGAGATGCCAATAGGGTTGTGATTAATATATTTGATGTGAGAACTGGCAAAGTGATGAGGGACTTTAAAGGTAGTGCCGATGATTTTGCTGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTGCTCTCTGTGTATGAGACGGAGACATTTTCTCTTGTTGACAAGAAGTCCCTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGTAACCAGCCTGCGAGGGTAAGTCTGATCCAAATCCCCAGCAAGGAAGAACTCAGGCAGAAAAACCTTTTCAGTGTCAGTGACTGCAAGATCTATTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTTGAACGCTATACGAAAACAAAAAAAAGCACATACACAGGCTTTGAGCTTTTTCGTATAAAAGAGCGAGACATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGCGGTTATTCATGGTGATAACCCTAAACCTGATGTAAGTATTTACTCCATGCGTACTGGTCAGAATAGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCTGGTCGCTACATTGTACTGGCTGGGCTGAAAGGATTCAATGGGCAGTTAGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCCGTGACATCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCACCTTCTTTCTTGAGCCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGCAAGAAATATGAGGCAGAAGATCAAGATGTTTCGCTGCTGCTGAGTGAACAAGAACGTGAGAAGAGAAGAATGTTGAAGGAAGATTGGGACAAGTGGGTCAATGAATGGAAGCGAATCCACGAAGAAGAGAGCTTACATCGACAGAAGCTCAGGGATGGGGAAGCCAGTGATGAAGAGGAAGAATACGAGGCAAAGGACATTGAAGTTGAGGAAGTCATTGACGTAAAAGAAGAGGTCCTTCATATTGAGTACGGTCAAGAGTGA 2157 0.4404 MADVMVMKEIEDTALRLDVDLSTLDLDSIRLPPGETCGIVSDDEEVYQEDNLEFESGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFCVSMFDDFDKFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEDWDKWVNEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVKEEVLHIEYGQE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02073 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Vian4g02073 718 CDD RRM_eIF3B 59 143 IPR034363 -
Vian4g02073 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Vian4g02073 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian4g02073 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Vian4g02073 718 Gene3D - 410 628 IPR015943 GO:0005515
Vian4g02073 718 Gene3D - 182 382 IPR015943 GO:0005515
Vian4g02073 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Vian4g02073 718 MobiDBLite consensus disorder prediction 675 694 - -
Vian4g02073 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Vian4g02073 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian4g02073 718 PIRSF Transl_init_eIF3b 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian4g02073 718 Gene3D - 55 154 IPR012677 -
Vian4g02073 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Vian4g02073 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Vian4g02073 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 625 - -
Vian4g02073 718 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02073 Vian-Chr4 37579431 37583175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02073 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.479 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02073 K03253 - gmx:100817394 1402.88