Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02070 ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCTCTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGATGCTCATGCTGCTGCTGCTGCTGGGAATTCTTCATCATTTAGGGGGAATTTGTGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCACCGCCACTACTTCCTCATGTTCTACTACTATGCATGAATGTGATGGATTGGTGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAGGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 792 0.471 MNMDTDMEKQAMSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANEDPLLLKPLAQESHADADAHAAAAAGNSSSFRGNLCKSDSTVESSSSTRTPTATTSSCSTTMHECDGLVQVDHGDMDWTFLKEFDYSNEVFPVGSDYDLYFELHKMHSTSGELLYSTPPPPPFEGYQELTEAEEDPFSHQSFLWNWNF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02070 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 168 - -
Vian4g02070 263 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Vian4g02070 263 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vian4g02070 263 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Vian4g02070 263 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Vian4g02070 263 MobiDBLite consensus disorder prediction 155 174 - -
Vian4g02070 263 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vian4g02070 263 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vian4g02070 263 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vian4g02070 263 Pfam AP2 domain 25 73 IPR001471 GO:0003700|GO:0006355
Vian4g02070 263 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02070 Vian-Chr4 37544315 37545106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02070 25 115 AP2-EREBP Transcription Factor Family AT1G74930 73.626 3.01e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g02070 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02070 - - vra:106760431 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02070 4 37544315 37545106 Vian4g02070 4 37544315 37545106 ECH