Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02064 ATGGTCAGCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCCCTTCATTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGACTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCATACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAAAGGCAGGATGTTGAACTCAGGAAATTGGAGATATTGGAAGAACATCGATTTGTGGAAGAAAGATATGGGGGTGATAAACGCCCGGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATGTACCTTGCAGGAAAAGTGATGCTGTGCTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAAGCAAGTATCCAAAGGGAACGGATACTTGAAGAGAAGTTGCTAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTGAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGAACCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGAATATTATGTTTCTTAAAATAATGCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCGTTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGCTAATATTTTGCAGCAATGCCGTGAAGTTCACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGTATAGAAAAGATGACTTCAGAGCATTCAGCTATTTCAGCGCCTCAAAGTGGCAGCGACAGAAAACCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGACGAATGTAGATCACCGGTTAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTTTTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCATTCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACATTATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAAAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATGTAGCAAGACACAGATGTTATTACCAAACAAAATTGGCTACAGAAGCTCCCATAAACTTGGTGGATTTTCTGACAGTTTATATCCAATCCTCTCCAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGATGTCTGAATCGGCCAGTTCATCTGATCACAGCTCAGAATCAAAGAACAGAAGTTTAGTTAGCAGAGATAAACTCCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCAGGGGAAGACTAACACAACTATCCAATCAAGCAACGGTACACTAGGAGTAACCAAATCCTCATCATGGCCTAAGATCCTTCTTGTTGAAGATACCAAGATTAATATCGTGGTGACACAGACCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCTGCACGTATAACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTGAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCAGGAATCGAGCAAAGTCTTCGAGACTCAGATTATGAATGTTCTGAACCTTGTAGAAAGCGGATTCCCATTGTTGCTGTGAGTAATGAGTCTGTTTGTGATGCTAAAGAATCTTAA 2529 0.4199 MVSEMENDCIEDMDIEALHSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFVEERYGGDKRPVSILDDVYDGIWHDVPCRKSDAVLQNKKNEIDAEYDTVMYWKQRALQLEKQLEASIQRERILEEKLLESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDIIGKTDVEIFTGAEPVFSKAGETIGINYMGMDITDQNIMFLKIMQVRKRERMAKIREEIAVQKAKETELNKTIHITGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPIELIFCSNAVKFTHEGKIGINLYVVPEPSFAKAECIEKMTSEHSAISAPQSGSDRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPFSAGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSKTQMLLPNKIGYRSSHKLGGFSDSLYPILSNDIMSKETCSVDDSSSVVDGPEMSESASSSDHSSESKNRSLVSRDKLQQDKAHTWSLNGYADSSEATVASGEMAAATKSCESQQTCQGQGKTNTTIQSSNGTLGVTKSSSWPKILLVEDTKINIVVTQTMMKQLGHSIDVVNNGVEAVRAVQRCTYNLILMDVCMPVMNGLEATKLIRSFEETGNWDAARNAGIEQSLRDSDYECSEPCRKRIPIVAVSNESVCDAKES 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02064 842 CDD HATPase_EvgS-ArcB-TorS-like 455 532 - -
Vian4g02064 842 Coils Coil 92 119 - -
Vian4g02064 842 Coils Coil 178 198 - -
Vian4g02064 842 CDD REC_hyHK_CKI1_RcsC-like 727 832 - -
Vian4g02064 842 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 533 IPR003594 -
Vian4g02064 842 MobiDBLite consensus disorder prediction 623 649 - -
Vian4g02064 842 SUPERFAMILY CheY-like 725 793 IPR011006 -
Vian4g02064 842 ProSiteProfiles Histidine kinase domain profile. 464 535 IPR005467 -
Vian4g02064 842 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 319 831 - -
Vian4g02064 842 Pfam Response regulator receiver domain 727 794 IPR001789 GO:0000160
Vian4g02064 842 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 319 533 IPR036890 -
Vian4g02064 842 Gene3D - 719 842 - -
Vian4g02064 842 SMART REC_2 725 815 IPR001789 GO:0000160
Vian4g02064 842 ProSiteProfiles Response regulatory domain profile. 726 842 IPR001789 GO:0000160
Vian4g02064 842 PRINTS Bacterial sensor protein C-terminal signature 495 513 IPR004358 GO:0016310|GO:0016772
Vian4g02064 842 PRINTS Bacterial sensor protein C-terminal signature 460 474 IPR004358 GO:0016310|GO:0016772
Vian4g02064 842 PRINTS Bacterial sensor protein C-terminal signature 519 532 IPR004358 GO:0016310|GO:0016772
Vian4g02064 842 Gene3D - 318 538 IPR036890 -
Vian4g02064 842 SMART HKATPase_4 356 535 IPR003594 -
Vian4g02064 842 MobiDBLite consensus disorder prediction 623 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02064 Vian-Chr4 37465803 37470235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02064 318 841 Histidine Kinase Gene Family AT5G10720 44.708 2.79e-132 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g02064 HATPase_c 7.9e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02064 - - gmx:100801640 1035.4