Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02059 ATGGAAGATTTTTACGACACAAGAATTGATGGTGTTAATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACTTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAAGAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTCATATGCAGGGGTGGTAATGCTATTGCTGTTTCTCGAGACCACAAACCGGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCTGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAAGTCCCTTGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCACAAATGAGGAAGCAGTTACTATGATTAAACCAATTGAGGATGCTGAAGAGGCAGCAAAGAAGTTGATGCAAGAAGCATATGGGAGAGGTAGTGCTGACAATATCACATGTGTTGTGGTTCGTTTCTTGACTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGTTAACCATGACACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCTTGGTAGTTCTGGAGATAACCGTGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGTAGTTCTGGAGGTAACCATGACACTTCCCATGGTACTTTTGGAGGTAACCATGGAACTTCTCATGGTAGTTCCGTAGGTAACCATGGCACTTCCCATGGTAATTCTGAAGGTAACCAGGGCATTTCTTATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAGGGCATTTCTCATGGTGGTTCTGGAGGTAACCATGGCACTTCTTCTCATAGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGGTTCTGGAGGTACCCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCACATGGTAGTTCTGGTGGTAACAATGGCATTTCTCATGGTGGTTCTGGAGGTAACCGTGGCACTTCTTCTATTGGTAGTTCTGGAGGTAACCATAACACTTCTTCTATTGGTAGTTCTGGAGGTAATCAAGGGCCTTCTTCTCATGGTAGTTCTGGAGGTAATCAAGGCCCTTCGTCTCGTGGTAGTTCTGGAGGTGTTAATAAGAACCCTCCGAAAGCTGGTTATAAGTGA 1587 0.4392 MEDFYDTRIDGVNGEIVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEKNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVTNEEAVTMIKPIEDAEEAAKKLMQEAYGRGSADNITCVVVRFLTNHGTSSHGNSGVNHDTSSHGNSGGNHGTSSHGNSGGNHGTSHGSSGGNHGTSHGNSGGNHGTSLGSSGDNRGTSSHGNSGGNHGSSGGNHDTSHGTFGGNHGTSHGSSVGNHGTSHGNSEGNQGISYGSSGGNQGISHGSSGGNQGISHGSSGGNQGISHGSSGGNQGISHGGSGGNHGTSSHSSSGGNQGISHGGSGGTHGTSSHGSSGGNHGTSHGSSGGNNGISHGGSGGNRGTSSIGSSGGNHNTSSIGSSGGNQGPSSHGSSGGNQGPSSRGSSGGVNKNPPKAGYK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02059 528 ProSiteProfiles PPM-type phosphatase domain profile. 1 234 IPR001932 -
Vian4g02059 528 FunFam probable protein phosphatase 2C 59 1 238 - -
Vian4g02059 528 SMART PP2C_4 6 232 IPR001932 -
Vian4g02059 528 MobiDBLite consensus disorder prediction 240 528 - -
Vian4g02059 528 CDD PP2Cc 1 234 IPR001932 -
Vian4g02059 528 ProSitePatterns PPM-type phosphatase domain signature. 19 27 IPR000222 GO:0043169
Vian4g02059 528 MobiDBLite consensus disorder prediction 240 518 - -
Vian4g02059 528 SMART PP2C_SIG_2 4 234 IPR001932 -
Vian4g02059 528 PANTHER PROTEIN PHOSPHATASE 1 233 IPR015655 GO:0004722|GO:0006470
Vian4g02059 528 SUPERFAMILY PP2C-like 1 234 IPR036457 -
Vian4g02059 528 Gene3D - 1 239 IPR036457 -
Vian4g02059 528 Pfam Protein phosphatase 2C 17 227 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02059 Vian-Chr4 37390703 37393968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02059 1 239 PP2C-type Phosphatase Gene Family AT4G31750 88.703 6.20e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02059 K17506 - vra:106761292 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02059 4 37390703 37393968 Vian4g02059 4 37390703 37393968 ECH