Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02051 ATGGGAATATATCTCAGCACTCCCAAAGTTGAAAAGTTTTCTGAAGATGGTGAAAATGAGCATCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTAATCTGGATGATTCGACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCGAAGTTTCTCCACCAAGAGGTGCTCAAAAGTAAAGCATACTTAACAGGAGATATAGGAACCTCTCTTCAGAAATCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGAGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACCGGGATGATAGAAGGTTTGATTTGGTCTCCAAGAAGCAGTGATGGTAATTGCCAAGTTGATGATTGGGCTTTTGAGGAGGGCCCTCATTCTGATTTTGGTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCGCGATGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGACATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCTGGACGAGTTAATGGAAGTTTAAATCTTACAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAGAAACAAATTTTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTAGTAGATTTTATTCATGCCCAATTGCACACGGAAACCAGACTTTCTACCGTGTGTGAAACAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGTTGGCGAGGGATGTGACAATATGACCATGATCTTGGTGCAGTTCAAAAGACCTGCTCGGTCCAGTGCATCAACAGAAGAGCAATCCTCTTCAACCGGACAAGCTGAACCTGAAACACAACTAGAGAGAAGTGAAAGTTAG 1083 0.4174 MGIYLSTPKVEKFSEDGENEHLRYGLSSMQGWRATMEDAHAAYTNLDDSTSFFGVYDGHGGKVVAKFCAKFLHQEVLKSKAYLTGDIGTSLQKSFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCQVDDWAFEEGPHSDFGGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLDIEKERILKAGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLPAEKQILTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFIHAQLHTETRLSTVCETVLDRCLAPSTAVGEGCDNMTMILVQFKRPARSSASTEEQSSSTGQAEPETQLERSES 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02051 360 SMART PP2C_SIG_2 28 329 IPR001932 -
Vian4g02051 360 MobiDBLite consensus disorder prediction 332 360 - -
Vian4g02051 360 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vian4g02051 360 Pfam Protein phosphatase 2C 157 313 IPR001932 -
Vian4g02051 360 Gene3D - 1 330 IPR036457 -
Vian4g02051 360 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vian4g02051 360 CDD PP2Cc 23 329 IPR001932 -
Vian4g02051 360 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vian4g02051 360 PANTHER PROTEIN PHOSPHATASE 2C 23 328 IPR015655 GO:0004722|GO:0006470
Vian4g02051 360 SMART PP2C_4 13 327 IPR001932 -
Vian4g02051 360 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vian4g02051 360 MobiDBLite consensus disorder prediction 332 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02051 Vian-Chr4 37313497 37318830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02051 1 341 PP2C-type Phosphatase Gene Family AT2G25070 76.540 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02051 K17499 - gmx:100787778 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02051 4 37313497 37318830 Vian4g02051 4 37313497 37318830 ECH
Vian7g00528 7 12852811 12857595 Vian4g02051 4 37313497 37318830 PCT