Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02028 ATGGCAAACTGTCACCGGAATAGCGTTGGATCCATCGCTCTCGACCACCGACACACTGAGAAAAATGCCACTGCTGGCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGATGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGCTACCGCTATCGCCAGCGTGGCGGCGGCGAAGGAAGCGTTGGTGACTTTAGTTCGGTGGCTAGTCATGCAGAGAAGGAGGAGAGGTCGGAGAAGAGGTCGGAGAAGCTGTCGGATCTGCTGAACGCGGCGGAGACGAAAACGGATGCGGAGGTGGAGAGGAAGGAGGAGGCATTGGCGGAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCTCGATGCGGAGAATCGCGGCGGAGAGAGTGAGGTCGCTGGCGAAGGAAGATGCCGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCATTCGCAAATCGCTTCGCTCTATGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAACAAAGCGACTGTAGTGAAAATCGGCACTGTACACAAGATGCTGAAACTAATTGAATCGAGTGATTCAAATTCGTCGGTGGCCGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAGTTGGTTCCTCCGGTGCAATACCTTTCCTTGTTAGCACCCTAAAAAATTTAGAGGCTAGTAAAACCGTATCACAATCCCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTGTCAATATGTCAGAGCAACATTTCGGTTATTCTGGAGACTGATTTGGCTTGGTTTTTAGTGAGCGCGATAGGGGACATGGAAGTGAGCGAGAGGAGTCTGGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCGGTGGTGTGAGCGATGCGATTCCGATTCTGGTGGATGTGTTGAGTTGGACGGACTCGCCAGAGTGCCAAGAGAAGGCGTCGTATGTGCTGATGATTATGGCACACAAAGCTTACGGGGACAGGAGGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTCGGAACCACGTTAGCTCAGAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGGTGGACAAGGGGAAACAGGTTTCAGGGAGCTACGCTGCAAACTTGAATTTGGGTGTCTCTGCTCCTATTTGTGGTGGCTCTTCTTCCTCCGAGGGTGGTGCAGGAGGAAGAGGGTCCTTGGTGGAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCAGTGAAACAGTTGGTGCAGCTAAGTCTGCAGAATAACATGATCAAAATCGTGAAGAGGGCCAACTTGCGTCAGGATTTCGTTCCATCTGCCCAAATTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1494 0.5228 MANCHRNSVGSIALDHRHTEKNATAGGHFRVLRRLIFDAVSCGGTSRYRYRYRQRGGGEGSVGDFSSVASHAEKEERSEKRSEKLSDLLNAAETKTDAEVERKEEALAELKRVVKELREEDLSMRRIAAERVRSLAKEDAEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKATVVKIGTVHKMLKLIESSDSNSSVAEAIVANFLGLSALDSNKPIVGSSGAIPFLVSTLKNLEASKTVSQSQSQVKQDALRALYNLSICQSNISVILETDLAWFLVSAIGDMEVSERSLAILSNLVSTPEGRKAIGGVSDAIPILVDVLSWTDSPECQEKASYVLMIMAHKAYGDRRAMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYAANLNLGVSAPICGGSSSSEGGAGGRGSLVEEEDGMMMSEEKKAVKQLVQLSLQNNMIKIVKRANLRQDFVPSAQIASLTSSSTSKSLPF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02028 497 MobiDBLite consensus disorder prediction 69 84 - -
Vian4g02028 497 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 497 - -
Vian4g02028 497 MobiDBLite consensus disorder prediction 58 84 - -
Vian4g02028 497 Coils Coil 75 120 - -
Vian4g02028 497 SUPERFAMILY ARM repeat 110 397 IPR016024 -
Vian4g02028 497 Gene3D - 107 251 IPR011989 -
Vian4g02028 497 Gene3D - 252 407 IPR011989 -
Vian4g02028 497 SMART arm_5 274 312 IPR000225 GO:0005515
Vian4g02028 497 SMART arm_5 139 179 IPR000225 GO:0005515
Vian4g02028 497 SMART arm_5 181 223 IPR000225 GO:0005515
Vian4g02028 497 SMART arm_5 224 273 IPR000225 GO:0005515
Vian4g02028 497 SMART arm_5 313 355 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02028 Vian-Chr4 36972534 36974119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02028 100 402 U-box Gene Family AT1G67530 30.645 2.34e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02028 - - gmx:100818576 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00478 7 11988159 11990389 Vian4g02028 4 36972534 36974119 PCT