Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02023 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGGTTTTGGAAAACCTCCTCCGGAAATGTCAATATCATGTAACTACGACAAATCAAGCAATAACAGCGTTGGCGCTTTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCCGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCCGAAGGAAGAAGTTTGACTCAAAAGAGAAGAACAAAACGAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCGTCAACCCAGAAGAAACCTCGGGTGGTTTGGTCTGTGGAACTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATCTGAGAATGAGTTCTGTGAATGGGGTTGGACATTTACAAACATTGACTGGTTCTGGGCAGCTTCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGGATAATTAATAGGTTGAACACTCCTGCGGGTTTGAATGTGCACGGATTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATGATCATCTGAAGTTCCGGTCAGCCATCACTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCATTGTCTGTTCAAAACAATAAGAGTCTCATTTCTGTTCAAAATTTGACCTCGGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAATAACATCTGTCTCTCGCACTTCAGATGTAGGTATCTCAAACAATGGCTTGATGTTGGAACCATGCCCTCAAAGCACACAAGGGAGTGTAAGGATTGAAACTTTATCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGGTATAATGATAGTTGGACTAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAAACCGACAAATGTACCTCCTCCAGATAACATGGCTACTATACCCCTGCAAGGTGGGAATCTGACTGGTCCATCCATCACTTCACTGTCTAGGCAATCCCATGATTCAATGACCGATATGCATTCTGAAGGGTTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTACCGTTTCAAGGGTGGGATGACCGAAATCACGATGCTACTCATCATTCGAATAATATGTTTGCATCAATAAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGCGGGCCATGCAGCAGCAAACTCAGCCTCACATAGAAATTTGGACTTTAACTTTTGTGATCCCTTACAAATGAAGCATGATGGTTTTGTGGAATTAACTGAAGAGATCTCATCTAAGCAACATCAGGGGAATATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTTTCTAGTAATCTTGGTTCATTGGAGGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGACAGGCTGAAATTATTGGATGAAAACCTCTTTTGCGATAATTACCCTGGTGGGTTATCTATGTGA 2028 0.4295 MTVEKRMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVNGVGHLQTLTGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAITPVNQNGVQGMPLSVQNNKSLISVQNLTSVFNAKTNFPISNKLPDPRPKITSVSRTSDVGISNNGLMLEPCPQSTQGSVRIETLSSVASQHSEFSLPLLDQGRYNDSWTSAVQPSVIQTNSYPPSECFKPTNVPPPDNMATIPLQGGNLTGPSITSLSRQSHDSMTDMHSEGLTLTNRPGNISSNVPFQGWDDRNHDATHHSNNMFASINSLTPVNGAAVPAGHAAANSASHRNLDFNFCDPLQMKHDGFVELTEEISSKQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDENLFCDNYPGGLSM 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02023 675 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vian4g02023 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 384 IPR045279 GO:0009736
Vian4g02023 675 FunFam Two-component response regulator 200 263 - -
Vian4g02023 675 MobiDBLite consensus disorder prediction 141 206 - -
Vian4g02023 675 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Vian4g02023 675 CDD REC_typeB_ARR-like 20 134 - -
Vian4g02023 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Vian4g02023 675 MobiDBLite consensus disorder prediction 151 171 - -
Vian4g02023 675 Gene3D - 200 263 - -
Vian4g02023 675 PIRSF RR_ARR_type-B 1 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vian4g02023 675 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vian4g02023 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Vian4g02023 675 Coils Coil 172 192 - -
Vian4g02023 675 SMART REC_2 18 130 IPR001789 GO:0000160
Vian4g02023 675 Gene3D - 17 153 - -
Vian4g02023 675 SUPERFAMILY CheY-like 17 141 IPR011006 -
Vian4g02023 675 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02023 Vian-Chr4 36897498 36901552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02023 1 378 Response Regulator Gene Family AT2G25180 58.333 3.88e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian4g02023 Response_reg 4.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02023 - K14491 gmx:100809002 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02023 4 36897498 36901552 Vian4g02023 4 36897498 36901552 ECH